barSeed - Barley Seed Development Database

Probe CUST_16641_PI390587928

Source Contig U35_47547

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16641_PI390587928	Hv_44K_v2	TCGAATGCCGAAAGATTGTTAATGGATCGAAGTCTTCAGAAGTTGGCAACGAGGAATACA	433	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9892.1	4218	2e-24	878 - 937	100	60 / 60	plus	None
JLOC1	JLOC1_6430.2	1928	8e-25	857 - 916	100	60 / 60	plus
JLOC1	JLOC1_6430.1	4348	8e-25	877 - 936	100	60 / 60	plus
Harvest21	ABC48694	496	3e-25	434 - 493	100	60 / 60	plus
Harvest35	U35_47547	496	3e-25	434 - 493	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_47547 496 Hv_44K_v2
TTGTGGAGATGAGCTATTTGCGCAGATTTAAAACAAACACGTAATAATCCCGATCGGAGT
TGGTTGATAAGAGCTTGGGAGCTAATGTATTTATGCGCATCTTCCATGCCACCAAGCAAA
GATATCGGGGCATACTTGTCTGAGTATGTTCACTACATTGCTCATGGAGCCACAACTGAT
TCAGATGTTCGAGTTCTAGCACTGAACACGCTAAATGCATTAAAACGTTCGGTTAAGGCA
GGCCCACGGGTTGCAATTCCTGCACGGGAGGAGATAGAAGCTCTTTTAACCAGCCGGAAG
CTTACAACAATTGTCTTTTTCTTGGATGAAACGTTTGAAGAGATCACTTACGACATGGCA
ACAACTGTTGCCGATGCTGTTGAGGAACTTGCTGGCATCATCAAACTTTCAGTATATTCC
AGTTTCAGTCTTTTCGAATGCCGAAAGATTGTTAATGGATCGAAGTCTTCAGAAGTTGGC
AACGAGGAATACATTG

Homology of Contig U35_47547 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57140.1	1196	2e-94	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g25390.1	1271	4e-96
Arabidopsis v10	AT5G65930.3	1266	3e-77	\| Symbols: ZWI \| kinesin-like calmodulin-binding protein (ZWICHEL) \| chr5:26370369-26376394 REVERSE LENGTH=1266