barSeed - Barley Seed Development Database

Probe CUST_16640_PI390587928

Source Contig U35_47549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16640_PI390587928	Hv_44K_v2	CTTCATGTATACGACTGCAAGAATGTTACAATCTCGGGAACTACTATCCTGGCTCCAATT	434	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18353.1	1898	2e-24	890 - 949	100	60 / 60	plus	None
MLOC	MLOC_18353.2	864	2e-24	591 - 650	100	60 / 60	plus	None
JLOC1	JLOC1_12701.3	1543	8e-25	511 - 570	100	60 / 60	plus
JLOC1	JLOC1_12701.2	1603	8e-25	511 - 570	100	60 / 60	plus
JLOC1	JLOC1_12701.1	1826	8e-25	734 - 793	100	60 / 60	plus
Harvest21	ABC48696	494	3e-25	435 - 494	100	60 / 60	plus
Harvest35	U35_47549	494	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_47549 494 Hv_44K_v2
CTAACACGGCGGCCTTCGAGGGCGCGGTGGCGGCCATCTCGGAGAGGGGCGGTGGGAGGC
TCACCGTGCCTGCTGGCCGGTGGCTCACTGCGCCGTTTAACCTCACCAGCCACATGACGC
TCTTCCTCGCTGCTGGCGCTGAGATCCTGGGGGTCCAGGATGAAAGATACTGGCCATTGA
TGTCTCCATTACCATCATATGGATATGGAAGAGAGCACAAGGGACCTCGATATGGGAGCC
TCATACATGGTCAAGACCTGAAGGATGTAATTATAACTGGTCACAATGGCACTATAAATG
GACAAGGCCAAAGTTGGTGGATCAAATTTCGCAAGAAGCTCCTCAATCACACCAGGGGTC
CTCTTGTTCAGCTCATGCGGTCAAGTAACATTATTATTTCTAACATCACATTGCGTGATT
CTCCCTTCTGGACACTTCATGTATACGACTGCAAGAATGTTACAATCTCGGGAACTACTA
TCCTGGCTCCAATT

Homology of Contig U35_47549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26800.1	527	2e-103	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi4g31250.1	532	7e-107
Arabidopsis v10	AT1G19170.1	506	5e-89	Pectin lyase-like superfamily protein \| chr1:6616777-6618875 FORWARD LENGTH=506