barSeed - Barley Seed Development Database

Probe CUST_1663_PI390587928

Source Contig U35_26020

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1663_PI390587928	Hv_44K_v2	ACAAAATAATAGATGCACCGTTGCATATGTGCTTTGCCATTTTGTACGTACTCCAAAAAA	672	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.708	1.661	1.035	0.806	0.342	0.446
Raw	812.585	1226.369	677.412	840.745	123.640	175.481

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10575.1	1767	9e-22	1713 - 1767	100	55 / 55	plus	ABC24979
Harvest21	ABC24979	741	3e-25	673 - 732	100	60 / 60	plus	ABC24979
Harvest35	U35_26020	741	3e-25	673 - 732	100	60 / 60	plus

Contig Sequence (741 bp)

>U35_26020 741 Hv_44K_v2
GAGCACATGAAAACGGATTGCAGGAAAATTATTACTGGTTGGACCGAATTCTGCGGAGCT
ATCAATCAAGGATTTATTCAGGGGATGTTGGATCCACCTTCATGGTTCAAGATGAGGGGC
GTGTAAAAGTTAGAGAAGCTTTGACACCACAGGCCATGCAAATGGCCTTGCGAAGGGTGA
TATCTTTCCCATGTAAAAAACAGTACACAGTAGTAATTCTTATGCCTAAGTCATCTCGTT
GGAATTCGTTGATATCGGTTGTTAGTTGGAGTTCTGGTGGATTTAGCAGAGATGCCAAGA
TTTTGGCTGGCATAGCTGGTGCACTGGTCTTAGCAGCCAGTTTGTGGAGATACTCACGCG
GTGCATTGAGATCGTAGTGCACAGCCCATTTAAGTTAAGAGCCAAGTTGGTACTAGAAGA
GTTTGTTACCATCTCACCATCAGCCAACAAATCTGGTTGTTGGTGCGGTGATTCTTCATC
ACGGAAGAAGGTATACAGAAATCGGTAGCTAACTGATTCGTTGCTGCGTGCGTGTAAGTT
GTAACAACATTGGTTACTGCCGCATGCGTGCGTGTAACAGACACTGAAGTGTTGTTGATT
CAAATGGTAGATTGCTTTTACCAGATTTAGTTTTGTCGAGATCGATTGCATGTGCTTTGT
GTACCCAGGATGACAAAATAATAGATGCACCGTTGCATATGTGCTTTGCCATTTTGTACG
TACTCCAAAAAAAAAAAAAAA

Homology of Contig U35_26020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g37825.2	831	3e-52	protein\|M16 domain containing zinc peptidase, putative, expressed
Brachypodium v1_2	Bradi2g41220.1	1022	1e-57
Arabidopsis v10	None