barSeed - Barley Seed Development Database

Probe CUST_16639_PI390587928

Source Contig U35_23591

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16639_PI390587928	Hv_44K_v2	CAGCAAGCTGGCGCAGCCGATGCAGCCCTCCCGGCAGGACGATCATCACAATCTCAACCC	389	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376294	2074	2e-24	422 - 481	100	60 / 60	plus	None
MLOC	MLOC_39385.1	834	2e-24	723 - 782	100	60 / 60	minus	None
JLOC1	JLOC1_25674.1	444	8e-25	333 - 392	100	60 / 60	minus
Harvest35	U35_23591	465	3e-25	390 - 449	100	60 / 60	plus

Contig Sequence (465 bp)

>U35_23591 465 Hv_44K_v2
GCAACCGCACCACCAGCGCTGCCCTGATCGGCACCGATGGCGGGCGATCCCACCGGCGGC
GGCGGCGGCGGTGGCTCCGCGGCGGGCAAGGGTCCCCGCTCGTCGACGCGCCACCAGCAG
TTCCGCGACCGCGCCAAGACCCGCGTGGACGACCTCCAGGAGATCTTCTCCGGCCTCCAG
TCCGCCCGCAAGGAGAGCCGCTCCGCAGACGCCGCCGTCCTCGAGGAGCAGGTCCACCAG
ATGCTCCGAGAGTGGCGGGACGAGCTCAGCGTCGCCTCCCCCGCCTCCTCCCTCCAGAAC
TCGCTGGGGAACAACCAGGGTGCCGCGGATCCGCCGTCGGAGACGCTGCGGCTGCTGCAG
CTGGCGATTGAGGAGGAGGACGACGCCACCAGCAAGCTGGCGCAGCCGATGCAGCCCTCC
CGGCAGGACGATCATCACAATCTCAACCCNGGACTGCAGTACATG

Homology of Contig U35_23591 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g19820.1	583	2e-54
Arabidopsis v10	None