barSeed - Barley Seed Development Database

Probe CUST_16638_PI390587928

Source Contig U35_23593

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16638_PI390587928	Hv_44K_v2	CTGTACTTAGCAGTTATGTACTCCCTATTCTTAATTTGACTCTATTATAAGTGTGTTGGC	950	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.175	2.588	1.300	0.681	0.289	0.321
Raw	507.096	864.031	409.980	334.317	49.335	60.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20809	1011	3e-25	2 - 61	100	60 / 60	minus	ABC20809
Harvest35	U35_23593	1011	3e-25	951 - 1010	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_23593 1011 Hv_44K_v2
GAGATCTCATACTGAGTATGTTCTTGACTTCATTGTTGAAAGGAAAAGTGTCACAGATTT
AGTTAGCTCAATTAGAGACAGCAGGTACAAAGATCAGAAATTAAGGCTAAAGAAATGTGG
ACTAAGAAAGCTGATATATCTGGTTGAAGGTGATCCAAACCCTTTAGGCGCATCAGAGAG
CATCAAAACAGCCTGCTTCACAAGTGAGATTCTTGAAGGATTTGATGTTCAAAGAACCAC
CGGGTATTCTGATACTGAAAGGACATATGGCCACCTGACACTTTCGATAATTGATTACTA
CAGCATGAAATTCTCAATCGGTGCTAACACTAGTCGAGTTTGCTTAACTTATGACGAGTT
TGTGAAGAAGTGTTGTGACCCCAAGAAGTTAACTGTGAGCGACATATTCGCCCTTCAACT
TATGCAGGTACCACAGGTGACAGAAGAAACTGCAATTGCAGTTATAGAGCTCTACCCGAC
ACTTGTCTCACTTGCTCGGGCATACTCCATGCTTGATGGCGATAGCCCTGCCCAAGAGAA
GATGCTGAACATGAAGAGCAAGATGGTGAACGCAGGGGCTAGCAGAAATATCTTCAAGCT
TGTTTGGGGTGAAGGGTGAAATATTACTGACCTAGTTACCTAAATGGGTTCCTTCCTGAC
TTGACTTGGTTCAACCGGCCTTTGGTCACCATCTCGATGATTTTGGCGCCGCTTCTTGTG
ATGAAGCAAATCTTGAGACGTCGCCATTGTTTCTTGAGACGTTGTCGCATAACGTGCATG
TTCCGAAGGCAAACTAAGACGTTTCTTTCTGTGTGCCTTGCGGTGCTGGAAGTTTCATCA
CGTAAAATCTTCCGATCAGGTGGTTACCTCTCTGTTGTAGAGCCTTGCAATGAGCTGGCT
ATGTGTTTCATATGTACTGTACTGTTTTTTTTTTGGGAATATCATATGTACTGTACTTAG
CAGTTATGTACTCCCTATTCTTAATTTGACTCTATTATAAGTGTGTTGGCA

Homology of Contig U35_23593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71960.1	661	3e-95	protein\|endonuclease, putative, expressed
Brachypodium v1_2	Bradi2g10500.2	510	2e-101
Arabidopsis v10	AT4G30870.1	659	8e-68	\| Symbols: ATMUS81, MUS81 \| Restriction endonuclease, type II-like superfamily protein \| chr4:15028586-15032461 FORWARD LENGTH=659