barSeed - Barley Seed Development Database

Probe CUST_16637_PI390587928

Source Contig U35_23594

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16637_PI390587928	Hv_44K_v2	TACTTATTGCATATCAGTTGTTCAATAAGGAAAGATAGTTTAACAAGGTCCCCACGATGA	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15396.1	2361	2e-24	110 - 169	100	60 / 60	plus	ABC20774 ABC25561
MLOC	MLOC_15396.2	2848	2e-24	36 - 95	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.3	2703	2e-24	36 - 95	100	60 / 60	plus	ABC20774
Harvest35	U35_23594	1022	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_23594 1022 Hv_44K_v2
CGTGGACGTGGGCAGGGAGTGGCGGGACGTGACGCTGGCGGACTGGGTGGTGTCCAAGAT
CAAGACCGACAAGCTGAGGAAGGTGGTCGACCCGCACATGCTCGACGAGCACCCCGACGT
GATGCCCAGCATGGAGGCGGTGGCGGAGCTGGCGTTTTGGTGCGTGGCGCCGGACAAGGA
CGACCGGACCGACGCCTGGGAGGCGCTGGCCGAGCTGAGGAGAATCCAGGGGTGCTCCCT
GAGCTATCAAACCACAAGGATTCCTCTTTGACTTAACTTTGGATCGCACAGATCAGAAAT
TCAGAATTGAGCTAGCACTGCACAATCTCTGGGGTTGTTGATGTCTGCGGTTCAAATCCT
GATCTCTTGTCTGACAGATCTAGCGCATTGGATGTGGAGTCAGAGAGGATAGTTCAGGAG
GCACTGAATAGGATCATGGTGGACAGAACGACACTTGTGGTTGTTCATCGTCTAACTACT
GTCAGGAATACTTATTGCATATCAGTTGTTCAATAAGGAAAGATAGTTTAACAAGGTCCC
CACGATGAATTGGTAGTAAACCCAGATGGTGCATACTCTCAACTAATTAGACTTCAAGAA
AGCAATGAAGAAGAGCAGAAAGTAGACCATCGAAGATTGGATCCAAGGTCTAAAAGTACA
AGCTTATCATTCAAGCGATCGATTAGCAGAGGTTCTGCAGGGAATAGTAGTAGGCATTCT
TTCAGCCACTCCTTCGGGCTTCCTGGCACGGTTGAATTGCCTGAAGGAAATGATACACAT
GGGGAGAATCATACAGAGCAGGATGGTGAGGTTCCAAAGAGAGCTCCTATGGGACGGCTG
GCACTTCTTAATAAACCAGAGTTACTTATTATTCTGTTAGGAGCCCTAGCTTCAGCAGTT
CACGGAGTGCTTTTCCCAATGTTCGGTGTGATGATTTCCAGTGCCATTAAAACTTTCTAT
GAGCCACCAGATAAACTCAGAAAGGATTCTAGCTTTTGGGGTTTCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_23594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50160.1	1275	4e-70	protein\|MDR-like ABC transporter, putative, expressed
Brachypodium v1_2	Bradi2g47400.1	1263	8e-78
Arabidopsis v10	None