- Probe CUST_16633_PI390587928
- Source Contig U35_23599
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16633_PI390587928 | Hv_44K_v2 | CGAACAATTTGCATTGAGACTGTAATCTTGGCAAGTGTAGAGCTTTTCATTGGGAGATTG | 417 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.089 | 2.766 | 1.446 | 0.805 | 0.291 | 0.313 |
| Raw | 2062.987 | 4278.800 | 1897.737 | 1727.388 | 204.989 | 245.138 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55137.1 | 2524 | 2e-24 | 2299 - 2358 | 100 | 60 / 60 | plus | ABC18671 |
| JLOC1 | JLOC1_35550.2 | 2647 | 8e-25 | 2415 - 2474 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35550.1 | 2561 | 8e-25 | 2329 - 2388 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18671 | 501 | 3e-25 | 418 - 477 | 100 | 60 / 60 | plus | ABC18671 |
| Harvest35 | U35_23599 | 501 | 3e-25 | 418 - 477 | 100 | 60 / 60 | plus |
Contig Sequence (501 bp)
>U35_23599 501 Hv_44K_v2 TCCAGTCGCAGGGGAACGACGACGTGGTGGACCTCCCGAGGTGGGTGCACTCGGTGGTCC GGGAGGAGTGGACGGCGGAGGTGTTCGACATCGAGCTGATGAAGCACCAGAACATCGAGG AGGAGCTGGTCCAGATGCTCCAGGTGGCGATGGCATGCACGTCAGGCCCACCGGAGCGGC GCCCGGCGATGGAGGAGGTGATCCGGATGATCGAGGGGCTCCGGCACTCCGCCTCGGAGA GCCGCGCCTCCTCCGACGAGAAGTTCAAGGAGTCCATCCCCCCGTCGGTATAGGATGGGA TTCCCCTCGCCGGCTTTCCTGTCAGCGGATCATTAGGTTTATATTTAGCTGATTTGTGAT TTGAGTTCATGCGCCATGCCAGCGCGGCTGGCATCATCAGGTGCGACCTCACTGGATCGA ACAATTTGCATTGAGACTGTAATCTTGGCAAGTGTAGAGCTTTTCATTGGGAGATTGAAA AAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_23599 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g17620.1 | 641 | 1e-52 | |
| Arabidopsis v10 | None |