barSeed - Barley Seed Development Database

Probe CUST_16631_PI390587928

Source Contig U35_35571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16631_PI390587928	Hv_44K_v2	AATCAGCACCAATTTTTGCTGATAATGTGCTTGATCCATCTGTGAGGCTTCGCAAGTTGA	483	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3087.4	2154	2e-24	968 - 1027	100	60 / 60	minus	None
MLOC	MLOC_3087.3	2189	2e-24	1030 - 1089	100	60 / 60	minus	None
MLOC	MLOC_3087.1	2293	2e-24	946 - 1005	100	60 / 60	minus	None
MLOC	MLOC_3087.2	2862	2e-24	1515 - 1574	100	60 / 60	minus	None
JLOC1	JLOC1_1854.3	4249	8e-25	1209 - 1268	100	60 / 60	plus
JLOC1	JLOC1_1854.2	3737	8e-25	1069 - 1128	100	60 / 60	plus
JLOC1	JLOC1_1854.1	3476	8e-25	1069 - 1128	100	60 / 60	plus
Harvest35	U35_35571	546	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_35571 546 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCGATAATGCTCGAGCGGCCGCTCGAGTACCAAGAAGAT
GCAACATTATTCATATTTCGCTTGAAATCATTGAAGCAAGGTCAATTCTTAAGTATTTTG
ACACAGGCTGCTCGCCATCATGCTGCTCAGTTGAGTTTTTTCAGGAGAGGCTTGAAGTAT
CTAGAGGCGCTAGAACCTCATGTAAAAGCAGTTGCTGAGAAGCAGCACATTGATTATCAG
TTCAGTGGACTAGATGATGACACTGATAATGATGATCACAGCTCCTACCAGGACAATCAC
AGTGAGGGCAGTGAGTTGAGTTTTGACTACGGGATGAACTTTCCTGCTTCCAGAAGTTCA
ATGGATTTGGATCAGTCTAATATGGAGAGTCCCACTAAACCTCTGAAGGAACATGAGCAG
GAACAAGCCAAACAAATAGAGACAGATTTGCAGCTCCTCGAATGAAGCCTGAGTTTATTA
CTCAATCAGCACCAATTTTTGCTGATAATGTGCTTGATCCATCTGTGAGGCTTCGCAAGT
TGAATT

Homology of Contig U35_35571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32370.1	625	3e-58	protein\|hydroxyproline-rich glycoprotein family protein, putative, expressed
Brachypodium v1_2	Bradi5g08690.1	625	3e-69
Arabidopsis v10	None