barSeed - Barley Seed Development Database

Probe CUST_16628_PI390587928

Source Contig U35_5351

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16628_PI390587928	Hv_44K_v2	TGTGGACAGCCATGGTTGGTGCAAGTCTAAATAAGATTTGTTTTCCCCAATGGTAAAAAA	1192	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.857	1.658	1.960	1.334	0.408	0.424
Raw	291.020	873.808	890.067	937.718	103.765	114.332

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC15468	1263	3e-25	1193 - 1252	100	60 / 60	plus	ABC15468
Harvest35	U35_5351	1263	3e-25	1193 - 1252	100	60 / 60	plus

Contig Sequence (1263 bp)

>U35_5351 1263 Hv_44K_v2
CGCAGGGCTCGAATGACCCCAAGTTCAGAAACCGGTATATTGCTGAGTTACTTGCCGAGA
GGCAGAAACTCGTTCCCTTCCTGCAAGTTCTTCCATTCTGTAATAGGCTTTTAAACCAAG
AAATTTTGCGGGCATCTTCTTTGCCACCTAACCCAAATTTTGTTGAACCTGAGAGATTCG
ATTATGGTAGCCCATTAAGATTAGCTGGCCACCCTATGAATGGTCAACCAATGGATTTGG
AGGGATGGACTGGAATGCATGCAGAGCATATGGGGATACACCATTCACCATCCATGGGCT
GGAATGGTGGTCCCGGAGTTGTTGGCGGTCCTGTTGTGAAGAAACTTGTCAGGATGGATG
TTCCAGCAGAAAAGTATCCAAATTTCAACTTTGTTGGTCGTTTGTTGGGCCCACGAGGAA
ACTCCCTGAAAAGAGTTGAAGCTACAACACAGTGTAGAGTCTATATTCGTGGACGTGGTT
CAGTGAAAGATACTGTGAAGGAAAACAAGCTTAGAGATAAGCCTGGCTACGAGCACTTAA
ACGAACCACTGCATGTGCTTATCGAAGCTGAGTTCCCGGCAGATATCGTTGATGCGCGCT
TAAACCAGGCTGTGGTCATACTGGAAGATCTTCTCAAACCAGTAGATGAATCCATGGATT
ACTTCAAGAAGCAGCAGCTGAGAGAATTGGCAATACTGAATGGCACTCTAAGGGAGGAAA
GCCCAAGCCCAAGCCCCCATCTCAGTCCCAGTGTATCACCTTTCAACTCCACCGGGATGA
AACGTGCGAAAACGGGCCGCTGATCGATCGTGCTTCTGAACACTGATTTGCCTGAGGTGA
CCATGATTTGAACAGATTGCGCCCAAACCTGTTCTACTGCTGGAAATGATTCCTGATGCA
TATGTGGGGCCAGCAGGGCTTTCTTCAGGCTCATCGCATCTGTGACACGAGCTGCGATAT
ATCTTTGGATGAATGGTTGCTATGAAAGAAATGAATTATGTCTGCTCGTGGAATCGGGGC
TTGCTGTTTGGTCTTATTGATTATTCTCTGTGTATCTATATGACTCCCAAATATTAACGT
TATCGATTCGGATTAGTTAATGCGATTGGTCGGTGGTTCGAAGTAATGTAGTTGTGCAAA
ATAATCAGGTTTTTTTGTCAGTTGTAACATGTCAGAGGTGTTTGCTGTTTCTTGTGGACA
GCCATGGTTGGTGCAAGTCTAAATAAGATTTGTTTTCCCCAATGGTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_5351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34670.1	292	8e-144	protein\|KH domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g57220.1	289	2e-133
Arabidopsis v10	AT3G08620.1	283	4e-89	RNA-binding KH domain-containing protein \| chr3:2617925-2620314 FORWARD LENGTH=283