barSeed - Barley Seed Development Database

Probe CUST_16624_PI390587928

Source Contig U35_5355

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16624_PI390587928	Hv_44K_v2	AAGAGAATCTAAGAAATGCTAGTAGGAGAGCTTATAAGGGGAGGAGTACACCAAGGTCGC	2473	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371005	1333	2e-24	619 - 678	100	60 / 60	plus	ABC16809
MLOC	MLOC_65816.1	1385	2e-24	765 - 824	100	60 / 60	minus	ABC16809
JLOC1	JLOC1_43336.1	1052	8e-25	837 - 896	100	60 / 60	minus
Harvest21	ABC12933	2571	3e-25	2474 - 2533	100	60 / 60	plus
Harvest35	U35_5355	2571	3e-25	2474 - 2533	100	60 / 60	plus

Contig Sequence (2571 bp)

>U35_5355 2571 Hv_44K_v2
GGAAGAGGAAGTGCTGGTGAATCTTGTGCGGTCAAACAAGATCCTGCTAGTTGCTCCAGA
GAGAGCTTATTTGGTATAGACTATATAAAATCAGCGTATAGAGACAAAAAGGAAGCACAG
AAAAGCACAAGGAAAAAGAAAAGACCAACTAGGCTAAAACAACATGGTCAACTCCATCAA
GTTTCTCAAGAAGCATGCGCCAATGGACTAGCTTCAGATTTAACAGGTGACTATTCTCCA
ATGGATTGTTCTCCTTATCAGGCATCAGTTGAACAAGTGCCAAGAGAGCCATTCGTGAGT
TGTGATCAGTCCACTGACATTGGTGATAGTAATGTCCCAAATCAGAACACCAGTTGTGCT
GAAGATGATCTAGTTTCTGCAACTGAGCACTTGGTTATTGATGCTGATCTTCCAACGTAT
CAAGATGAAGGCAGAGATTCAATCGCGGATGCATCTGAGAGTAATTTTGGTAGCAACTTT
TCTAGTTTCGATGGAGAGATAAATTTCTGTAATGCACCGCAGCCCATTTTCACTAATATG
AATGTTGGTGCAAACGGTGAACCTAAAATGTACACAACAGAAGCTTGGGTTGATGGTTCT
GGATGTAATGTTAGTGGGCCAATTTGCGAAGAGAACACCTCTAGAACACCACACGAGTCT
GGTGAACCTGTTAATATTCAATCAAGCTCGGTAAATTTGAGTGGGCTGAACTTCACCTTT
GGTGCATCACTGTACCCTGAAAGTTCCTTACCGACACAAAGACATACTACAAAAAGAAAG
TTAAGGACTAAGGTTGGTCAGGCGCCTAAGCCTTCAGCTACCCAGGCTTCTGTACAACCA
AAAGGCTCACAAGACACAAAGAGCATGCAGTTTTCCCCAGAAACAAGCACAACAGAAAAT
TCAGTGAGAGAGCAGTTGAGGAGAGATGCATCAATTTCTGCAGATTTGGAGACTTGTGAG
ACCTGGCGTACAAGTGGGAATCAAGCCTATGCAAATGGTCACTTTGCTACTGCAGAGGGG
TGTTATACCCGTGGAATAAATTCGATTTCCCAGTATGGAACTTCTGGACGCTGTTCCCAT
GCATTGATGCTGTGCTATAGCAACCGTGCAGCTACTAAAATGTCTCTGGGGAGAATGAGA
GAAGGTCTTCAAGATTGTTTGATGGCGACATCTATTGATCCCACCTTTCTTAAGGCTAAA
GTTCGTGCAGCAAATTGTCAACTTGCGCTTGGGGATCTTGAAGGTGCATCAAACAATTAC
ACAGCCTGTTTGAAATCTAGTAACACTGCTGATTTTGACACCAAAATGTTTGCTGAGGCT
TCTAATGGTCTGGAAAGAGTCAAGAGAGTGGCAGACTGTATATCCCAGGCCAGGGAGCTT
CTTAAGAAAAGAACATTGCCTGAAGCAAAAACAGCTTTGGAACTTATCTCCAGTGCATTG
CACATAAGTTCACACTCGGATAACCTAATGGAGATGAAAGCAGAGGCACTCCTGACGCTA
CGAAGATATGAAGAAGTGATTGAACTCTGTCAAGAAACAGCAGATTTAGCTGAAAGAAAT
TCTGTTTCAATTAATGCCAATGAAGAGCCAAATATTTCCAGTGTATCTGAAAAGGCAGAA
TGCTCTGTAACACTTTGGCGACCATTCCTTATTTGCAAGTCCTACTTCCTTCTAGGCAAG
CTTGAAGAGTCTCTTGACTTGTTAAAGAGGCATGAGCTAGTGACACCTGCCGAAGAGAGT
GACGGGAGCACTACAAATTGTTTCTCATCATTGGCTACAAGTATAAGGAAACTTCTTTCC
TTCAAGGCTGCGGGAAATGAATCATTTCAAGCTCGGCGATATTCAGAAGCTGTGGAACAG
TATTCAGCGGCTTTGGTGTACAATAGTGATTCACGGCCCTTTTCAGCTGTCTGCTTTTGC
AACCGTGCAGCTGCACATCAAGCACTTGGTCAACTTACTGATGCAATTGCAGATTGTTCA
CTAGCCATGGTTCTCGATGCAAATTATCCCAAGGCAATTTCCAGGCGAGCCACCTTATAT
GAGATGATAAGGGATCATGGGCAATCTGCTAATGATTTACGGAAGCTAATCTCACTTCTT
CAAAAGCAAGGCAATAAGCCTGGAGTGTCACCAAAAGTTTTCAACAAGCATAGTGACCTG
AAGCAGGCGCGTGCCCGACTTGTATCTGCGGAGGATGAAGCAAGAAAAGATACTCCCTTG
AATTTTTATTTAATCTTGGGAGTCGAACCTTCCTGTTCTCCAGCAGATATTAAGAAGGCC
TACCGAAAAGCTGCATTGAGACACCACCCGGATAAGGCCACTCAACTGCTTGTAAGAAAT
GAGAATGCTGATGATGGGTTTTGGAGGGATGTCGTGAAGGAGGTTTATGCAGATGCCGAT
CATCTGTTCAAAATGATTGGAGAGGCATATAATATTCTTTCAGATCCTGACAAGCGTGAA
GAATATGATATTGAAGAGAATCTAAGAAATGCTAGTAGGAGAGCTTATAAGGGGAGGAGT
ACACCAAGGTCGCCCGAACAGCACTACAGAAGACATTATGAAGGGGGTTTT

Homology of Contig U35_5355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31056.1	678	0.0	protein\|tetratricopeptide repeat containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27160.1	1547	0.0
Arabidopsis v10	AT5G12430.1	1165	5e-167	\| Symbols: TPR16 \| Heat shock protein DnaJ with tetratricopeptide repeat \| chr5:4028475-4034086 REVERSE LENGTH=1165