barSeed - Barley Seed Development Database

Probe CUST_16619_PI390587928

Source Contig U35_5360

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16619_PI390587928	Hv_44K_v2	TGTGCTTGTGGGAGTGATTCGTTACTAGTATTGCACTTCCTGCGTTTCAAAATAAGTATC	511	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.360	4.615	1.569	0.721	0.942	0.839
Raw	31.750	51.997	15.608	10.713	2.865	2.944

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81649.2	1453	2e-24	657 - 716	100	60 / 60	plus	ABC13062
JLOC1	JLOC1_54307.1	1496	8e-25	666 - 725	100	60 / 60	plus
Harvest21	ABC13062	658	3e-25	512 - 571	100	60 / 60	plus	ABC13062
Harvest35	U35_5360	658	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_5360 658 Hv_44K_v2
CTCATAATGGATCGCCAGAGCTTGCGAGTCGGTGGCGCCGGCGACGCGCAGGAGTTATGC
TACGTCGGCAGCCGGCAGGCCGAGGTCGACGGCGGGGCCTTCCTGATGGAGCTGCTGGAG
GACACAACGGCGCCGGAGGCCGCCGACGACCGGCTGAGACGCGTCATGCGGTCCCTCGAG
GCCGAGCTCGGCATCGCGTCGGCGCCGGCGCCGGCTGCGGCGGAGGACGGCGAGAGCACG
GCGGACGGGCCGATGAGCGACGACGACGACGGGGGGCTGGAGGACATGCTGTCGGAGCTG
GAAGGTAGCCTTGGGGGCGAGGCGCCGTCGTTGGCCACCGTGCTGCCGTTGGAGTATTGG
GAGGAGGTGGCGCCGGTGATGGGCGGCGACATGGGCGGCTGGTACGTCGACGGCGAGGGG
CTCGTTGCTGGGTACGAGTACAGGGAGCCATGCTGTTACAATAATTACGCATATGGTGAG
GGGTCCGCCGTTGAGCAGGTGTACAGCCCCCTGTGCTTGTGGGAGTGATTCGTTACTAGT
ATTGCACTTCCTGCGTTTCAAAATAAGTATCATAAAATTTATATTAAATTGATATAAATT
TTATACTGAATCAACAATATTTACTTTGAAACAAAGGTAATATTTTACCCTTCGTTCT

Homology of Contig U35_5360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None