barSeed - Barley Seed Development Database

Probe CUST_16618_PI390587928

Source Contig U35_5361

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16618_PI390587928	Hv_44K_v2	GATGGCAGAAAACTTCTTTGCTGAAATGCCTACTTGTCCTCTAAAAAATAAATACCATTC	1865	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.441	1.668	1.057	0.873	0.386	0.453
Raw	2209.470	3983.123	2218.920	2859.075	447.655	565.792

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4586.1	2218	7e-23	135 - 194	98	59 / 60	minus	ABC12114
JLOC1	JLOC1_2877.1	5912	4e-23	3831 - 3890	98	59 / 60	minus
Harvest21	ABC12114	1931	8e-21	1866 - 1917	100	52 / 52	plus	ABC12114
Harvest35	U35_5361	1954	3e-25	1866 - 1925	100	60 / 60	plus

Contig Sequence (1954 bp)

>U35_5361 1954 Hv_44K_v2
GCTCCTCCCTCCTCCCCCACCATCGCCTCATGTCCGGCTCCTCCATCGCTGCCATATTCT
TCCAACCATCCCTGCCGGCGGATCCCACCACCGCGATCCAGTCAGCCGGCATCGACCTCT
CCCACCCCAATACCATCCCCGCCCTCCTTGTCCACCCGGACCTCGCCTCCAATTACCCCG
CCGCCTCCCGCTTCTTCTCCTGGGCCGCATCCCACCCTGACGCCGCCGTCCTCAACTCCA
AGTGCTTCAACTCCATGCTCCAACTCGCCGCCGCCAACAGCGACGCCGCCCATTTCTGGT
CACTCGTCTCCTCGATGCGTTCCAAGGGCTACGGCATCTCGAAGACCACCCTCCAGGCCG
CCACGGAGAGTTTCCGGTCCAATGGCATGTCCAAGGACGCCGACATGATCCAGAAGGCCT
TCTCCGCGCACGCCAGGAACGCAGCGGTGGCGGAGGCGTGCAAGATTCTCCGCTCAGATG
CCGATGAGCTATCTAAGTTGGACAAGCTGAATGAGTTGGGCGTTGAGGTGACTGATGAGA
TGGTGGCACTGGTTGTGGAGAAGGTTGGACAGTTCCCGCGACAGGCAATGGCGTTCTTTA
ATTGGGTGGAGCAGTCTGCTGGGGCAGGGATCAACTGGGGCAAGGCTTACAATGCAATGT
CAAAGATCATTGGCCGGGAGGATTGCATCGAGGAGTTCCGGGAGGTCCTGCGGAAGATGA
GTAGCAAGGAGGTTGGGATGGATAAAGAGGTGTACGTTATTCTCATTGACAGGTTTCTCA
AGAGGAAGATGTTTGAGGATGCAGTGGACTTGTTCCGGTTTGCAATGGGGGGGACGGAGA
AGCCATCGGCTCAGGATTTTGTCTTCTTATTGAAGAAGCTTGTTGTGAGGGATGATATGG
ATCTGAAGCTGGTGATGAGGCTTGTGCGGATCTATCAGAAGGCGGGGAATGAGGTGAAGG
CTTCTATGTTTGATGCTGTTATCAAGTCACTGAGAAGCGTACAAAGGCTTGGTGAGAGTG
GTAGGGTGTTGAAGGCCATGGAGGAAGGTGGTTTTGCACCAGACAGCACTGTGCATGGCA
AAGCTGTTCTTGCAATGTGTGATGCTGGGAATCTGGAAACAGCGCGCAAACATTTGGCTC
GTGTGGAAAAATCAGGGCATAAGTTGGATCCACTTGTATGGTCTGCTTTGGTTCAGAAGT
ATTCCCTTGGTGACGATGTTGATATGGCAGTTTCATGCTTCCCTGAAATGCTGGAAAGAA
GAAGTGGCAATCAGGTTGGTAGTGCTCTTGAGGTCCTTGTGTATGGGCTGTGCCGGAAGA
AAGAAGCAAAGGAAGCGTTCAAAGTTCTGAAGGACCTGGTGCTGAAAAAGGATGTGGTTC
CTTGGCAAAGTACCTACAAGTATTTGATCCACAAGTTGATCCGCCAAGGGCATCTTAAAG
AAGCATTTGATGTGCTAGGTTTAATGAAAAGTAATGGATTTCCGCCTTATATTAATCCAT
TTGTCACTCACATTTTGAAATCTGGGACCGTGGATGATGCCCTGGGTCTGCTAAACGCAA
TGTCTTCAAAGGAGTTCCCATCAAGAACAGTTTACATGCGCTTGTTTCAAGGTCTGTTCA
AAGAGGGGAGGCATGAAATTGCCCAGCAGCTGCTCTCGGTATCTCCTGGAAGTGTCCGAA
ACCATGCAGATGTTCTCGACCTTTTCTATAAGATGAAGATTGAAGAACCTGCAGCAGCGG
AGGCAGCAGCTTTGTAGATTATTCTTATGTTGAATCGAATTGCTGACGCTTGTATTTCAA
GTGGCGTTTTGTATTCCCTTTTGGCTTTGTTTGTAACTGGCCTTTGAGCCAGAATCAGAA
GTTTGGATGGCAGAAAACTTCTTTGCTGAAATGCCTACTTGTCCTCTAAAAAATAAATAC
CATTCTTTTTTCCTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73950.2	574	3e-85	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi3g07350.1	597	0.0
Arabidopsis v10	AT3G02490.1	665	1e-100	Pentatricopeptide repeat (PPR) superfamily protein \| chr3:513607-515604 FORWARD LENGTH=665