barSeed - Barley Seed Development Database

Probe CUST_16606_PI390587928

Source Contig U35_5373

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16606_PI390587928	Hv_44K_v2	AGAGGTCAAAATGTTGTGTTGTGTGAATTTGAAATGCTTATGAGGGTTCTATTTCCAGTT	493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361939	1404	2e-24	1300 - 1359	100	60 / 60	plus	ABC17934
MLOC	MLOC_68064.1	731	2e-24	583 - 642	100	60 / 60	plus	ABC17934
JLOC1	JLOC1_44998.1	872	8e-25	616 - 675	100	60 / 60	plus
Harvest21	ABC17934	456	3e-25	341 - 400	100	60 / 60	plus	ABC17934
Harvest35	U35_5373	610	3e-25	494 - 553	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_5373 610 Hv_44K_v2
TTTAAAGTTGGGGTGGTGCCAATGGATAGGTGCTGTTATATTCATTTGGGGATCCCTCCA
TCAGATCCGCTGCCATGCAATTCTTGGATCGTTGCGCGAAAATAAAGATTCTGATGAATA
TGTTATTCCTTGTGGTGACTGGTTTAGTCGTGTGTCTTGCCCTCATTACCTTGCTGAACT
AGTCATATATTTGGGCATGTTGATAGCTAGTGGTGGATCAGACATTTCAGTGTGGTTCCT
GTTCATTTTTGTGATAACAAACTTGTCATTTGCAGCAATACAAACTCATAGATGGTACCT
TCAGAAGTTTGAAGACTACCCCCGTTCTCGCTATGCGATCATTCCATTTGTATTGTAGCA
TCTACAGGCATTCCTTGTGTGCAGTAAAAAAATCGTGCGTTCTGGCTAGAATGCATAAGC
CCGGCTTGTAAAAGATATTCATGTAAATGTGACAGCTTGTAAGTTAAAATGTCGTGCAAC
TCAAAAAAAAAAAAGAGGTCAAAATGTTGTGTTGTGTGAATTTGAAATGCTTATGAGGGT
TCTATTTCCAGTTGTAAATTACGATACATAATTAACATAATTGGGTCTTTGGAAAAAAAA
AAAAAAAAAA

Homology of Contig U35_5373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48750.2	277	3e-76	protein\|3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g19010.1	356	2e-81
Arabidopsis v10	AT1G72590.1	320	1e-52	3-oxo-5-alpha-steroid 4-dehydrogenase family protein \| chr1:27335601-27336989 FORWARD LENGTH=320