barSeed - Barley Seed Development Database

Probe CUST_16604_PI390587928

Source Contig U35_5375

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16604_PI390587928	Hv_44K_v2	GAGTTTGAGACATGATAAAGTTCTTCACCGTTTCATTGTACAAGCACAAAAGTGTAAGAA	1142	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.430	2.756	1.250	0.708	0.190	0.210
Raw	750.894	959.170	374.635	344.189	31.759	38.422

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58322.2	3305	7e-23	1582 - 1642	98	60 / 61	minus	ABC12862
MLOC	MLOC_58322.3	1845	7e-23	151 - 211	98	60 / 61	minus	ABC12862
JLOC1	JLOC1_37883.1	2605	4e-23	1416 - 1476	98	60 / 61	plus
Harvest21	ABC12862	1204	3e-25	3 - 62	100	60 / 60	minus	ABC12862
Harvest35	U35_5375	1204	3e-25	1143 - 1202	100	60 / 60	plus

Contig Sequence (1204 bp)

>U35_5375 1204 Hv_44K_v2
CTGTATGCTTTCCTAAAAAAGAAACAGTCTAAGAAGGTCATGGTGTTCTTTTCATCATGT
AGCTCAGTAAAGTTCCATGCAGAACTTCTAAATTTTCTCCAGATAGAGTGTGAAGATATC
CATGGGAAACAGAAACAGCAGAAACGAACTACAACATTCTTTAACTTCTGTAAGGCAGAC
AAGGGCATCTTATTATGCACTAATGTGGCAGCACGTGGACTTGATATTCCTGATGTGGAT
TATATTGTGCAATATGACCCTCCAGATGAACCAAAGGATTACATTCACAGAGTTGGTCGT
ACTGCACGTGGTGAAAAAGGCAAAGGAAGCGCCTTATTGTTCTTGTTGCCACAAGAACTG
AAGTTTCTTATTTACCTGAAGGCAGCCAAGATTTCTCTCACAGAATACGAGTTCAATAAT
AAGAATGTGCCAAATTTACAATCGCACCTTGAGAACATCGTTGGCGAGAATTACTTCCTA
AACCAGTCAGCTAAAGAAGCCTACAGATCCTACATCCTGGCATACAACTCACACGCCATG
AAGGACATTTTTAATGTTCATGATCTTGACATGAAGGCTGTAGCAGCATCATTTTGTTTT
AAGAACCCTCCAAAAGTGAACCTTGATTTGGAGAGCAGCGCTTCTAAACGTCGTAAGACG
AGGAAAGTGGATGGTGGGGCGAGGAGGCATGGTATCAATGCCGCAAATCCTTATGGAAGG
AAGGGTGGTGATGATAACAGGCAATTTGCAAGATTCTAGAGGTCCGGCCAGCCAGCCAGC
CAGCCTATGAGTGGTCTCTAATGATGGTAAACTCTAATGTTAAGCATTGATACCATGGCT
TTGAGTGTTTTATGATGTCTCTGGTAAACTGTAATGTTAAGCAGGCAGAGTTTAGAAGGC
ACTTTTTGGCTCTGTAAGATTTTGTTAGATAGCTCGATACACAATTTTACGTACTAGGTT
GATGCCTGGATGATTTGAGAAACAAAGAGTCGATCCCTGTTATTGCAAGTGTTTTAGCAG
ATGTTTGCTTCGGTTTTTTCATGAGTTCATGCAGTGTTGTTGCCTGAAGGAAGGAGATGT
TGTTGGGAGTAGATAGTTTGAGGTGCCATTAGTGAGATTTTAGCATACGAGTCCTGAGTG
TTGAGTTTGAGACATGATAAAGTTCTTCACCGTTTCATTGTACAAGCACAAAAGTGTAAG
AATA

Homology of Contig U35_5375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58810.1	591	7e-147	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g41160.1	580	5e-163
Arabidopsis v10	AT3G18600.1	568	3e-89	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:6399724-6403007 REVERSE LENGTH=568