barSeed - Barley Seed Development Database

Probe CUST_16579_PI390587928

Source Contig U35_10400

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16579_PI390587928	Hv_44K_v2	ACCAGCTGACGGCCATCTTCGCCGCGAACAACCTGTCCCAGGTCGACATGATTGCGCTCT	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375700	1451	2e-24	734 - 793	100	60 / 60	plus	ABC13657
MLOC	MLOC_57775.3	1419	7e-23	486 - 545	98	59 / 60	minus	None
MLOC	MLOC_57775.2	1719	7e-23	434 - 493	98	59 / 60	minus	ABC13657
MLOC	MLOC_57775.1	2914	7e-23	1544 - 1603	98	59 / 60	minus	ABC13657
JLOC1	JLOC1_37500.1	1745	4e-23	873 - 932	98	59 / 60	plus
Harvest21	ABC21070	671	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_10400	671	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_10400 671 Hv_44K_v2
GCAGGACTACTACTCCGCCAGCTGCCCCAACGTGGAGGCCATCGTGCAAGCCGCGGTCGC
CCTCAAGGTCCAGCAGACGCCCGTCGCCGTCGGCGCCACCGTCCGCCTCTTCTTCCCGAC
TGCTTCGTCCAGGGATGCGACGCGTCGGCCATCATCGTGTCGACGGCGAACAACACGGCG
GAGAAGGACCACGTGAGCAACCTGTCCCTTGCCGGCGACGGCTTCGACACCGTCATCAAG
GCCAAGGCGGCCGTGGACACGCAGTGCCCCAGCCCCAACCTGGTGTCGTGCGCGGACATC
CTCACCATGGCCACCCGCGACGTCATCGGCCTGGCCGGCGGCCCGGCGTACGCGGTGGAG
CTGGGGAGACTGGACGGGCTGGTGTCGACGGCGAGCAACGTGGATGGGAACCTGCCGCCG
CCGTCGTTCAACCTGGACCAGCTGACGGCCATCTTCGCCGCGAACAACCTGTCCCAGGTC
GACATGATTGCGCTCTCCGCGGCGCACACGGTGGGGTTCGCGCACTGCGGGACGTTCACG
GGCAGGATCCAGACGGCGGCGGTGGACCCGACGATGGACCCGGGGTACGCGTCGCAGCTG
CTCGCGGCGTGCCCGGCGGGGGTGGACCCGAACGTGGCGCTGGAGATCGATCCGGTGACG
CCGCACGCCTT

Homology of Contig U35_10400 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55420.1	325	3e-102	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g07780.1	327	1e-102
Arabidopsis v10	AT3G49960.1	329	8e-74	Peroxidase superfamily protein \| chr3:18524313-18525610 REVERSE LENGTH=329