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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16573_PI390587928Hv_44K_v2CTTCGGCAAGCTTCATAATTCAAAATACTTGAGAAATCTCAGACAATTTCGCTGGTATAA659GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7882.3861.9460.8730.2440.318
Raw 382.282824.413559.931394.99837.02155.201



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_37162.119958e-251832 - 189110060 / 60plus
Harvest35U35_104067583e-25660 - 71910060 / 60plus



Contig Sequence (758 bp)

>U35_10406 758 Hv_44K_v2
GATCACAGGGGAAGAGTGGAAGGGCATGACGGAGGCTCAGAAGGCTCCTTACGAGGAGGC
TGCGAGGAAGCAGAAGGAGGCATACCAGAAGCAAATGGAGGTGTACAATCAGAAGAAGCT
TGGGGAAAATGCGAGCTTAGAGAAGGAAGAAGAGGAGCAGAAGAAGATCCTCAAGCAGGA
GGCTCTGCAGCTTCTCAGGAAGAAGGAGAAGGCAGACAACATCATCAAGAAAACCAAAGA
GAAGCGTCAGAAGAAGAAGCAGCAGAACGCCGACCCGAACAGGCCCAAGAAGCCGGCCTC
TTCCTTCCTGCTCTTCAGCAAGGAGGCGAGGAAGCAGCTGGCGGAGGAGCGGCCCGGGGT
GAACAACTCGACGCTTAGCGCGCTAATCTCGGTGAAGTGGAAGGACCTGAGCTCCGCGGA
GAAGAAGGTGTGGAGCCAGAAAGCGGCCCAAGGGATGGCCGCGTACAAGATGGAGATGGA
CGAGTACACCAAAGCTCACACCTCCTCATCCTCGACTATTGCTTAGGGTGGTGTCCCTAG
GTTCAGCTGTTACTCTCGGTTGAACTATGAACTCAAGGATTCCCGTCTCTGAATCCTTAG
TGGTAGATTTAGCGTTCTGGTCATGAAGTTGTTTTCTAGTCGTATGCCATGCATGGTTGC
TTCGGCAAGCTTCATAATTCAAAATACTTGAGAAATCTCAGACAATTTCGCTGGTATAAA
AAAAAAAGGAAGCTTGAACTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_10406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g15810.15056e-52protein|HMG1/2, putative, expressed
Brachypodium v1_2Bradi3g09690.15382e-66
Arabidopsis v10None