barSeed - Barley Seed Development Database

Probe CUST_16572_PI390587928

Source Contig U35_10407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16572_PI390587928	Hv_44K_v2	GACCGAGAGCCTCCGCTGTGAATACGTCAAGCTCATCGATGGCTTCTTCTCCATCCCCTT	704	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10658.1	1955	2e-24	1106 - 1165	100	60 / 60	minus	ABC20267
JLOC1	JLOC1_6991.1	2108	8e-25	824 - 883	100	60 / 60	plus
Harvest21	ABC21841	767	3e-25	675 - 734	100	60 / 60	plus
Harvest35	U35_10407	798	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (798 bp)

>U35_10407 798 Hv_44K_v2
CTCCTCTCCTCTCCTCCCCTCTGGCTGTCGCAGAGTCGCCAATCTCACTCCCCCACCCTA
ACAAAGCCAAAACGCACACCGCCACGGCCATTAGCACGGCGAGCTATGGACGCCGGCGCG
CTCCAGCTCGCTGCCACCGCCGTTGCCATCGTCGCCGTCGCGTTGGTCTGCAGATGGTTC
CTTGTGGCGTGCGCGGCCCGGGGCCGGAAGCAGAGGCCGCGGCTTCCGCCGGGCAGCACG
GGGCTGCCCCTGATCGGCGAGACGCTGCGGCTGATCTCCGCGTACAAGACGCCCGACCCG
GAGCCCTTCATTGACGAGCGCGTGGCGCGGCACGGTGGCGTGTTCACCACCCACATCTTC
GGCGAGCGCACCGTCTTCTCCGCTGACCCGGCCTTCAACCGCCTCCTCCTCGCCGCCGAG
GGCCGGGCAGTCAGCTGCAGCTACCCTTCCTCCATCACCACGCTCCTCGGCGCGCGCTCC
CTGCTCCTCACGCGGGGCACCGCCCACAAGCGCCTCCATTCGCTCACCCTCACCCGCCTT
GGACGCCCCGCGTCGCAGCCCCTGCTCGCGCACATCGACCGCCTCGTGCTCGCCACCATG
CGCCAGTGGGAGCCCACCGCCACCGTGCGTCTCCTCGACGAGGCGAAGAAGATCACCTTC
AACCTCACCGTCAAACAGCTCGTCAGCATCGAGCCCGGGCCCTGGACCGAGAGCCTCCGC
TGTGAATACGTCAAGCTCATCGATGGCTTCTTCTCCATCCCCTTCCCTTTCGCCTCGTTC
CTCCCCTTCACCACCTAC

Homology of Contig U35_10407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g04480.1	502	5e-123	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi4g43110.1	499	1e-131
Arabidopsis v10	AT5G05690.1	472	1e-67	\| Symbols: CPD, CYP90A, CYP90, CBB3, DWF3, CYP90A1 \| Cytochrome P450 superfamily protein \| chr5:1702907-1706705 REVERSE LENGTH=472