barSeed - Barley Seed Development Database

Probe CUST_16571_PI390587928

Source Contig U35_10408

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16571_PI390587928	Hv_44K_v2	GGTAGTATAGCACTTTCCATAAGACAGGTAGCAGTGAGAGCAGCAGACTGAAGGAAGTAT	448	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12009.1	2646	2e-24	75 - 134	100	60 / 60	minus	ABC14139 ABC21126
JLOC1	JLOC1_8015.2	2889	8e-25	2468 - 2527	100	60 / 60	plus
JLOC1	JLOC1_8015.1	2877	8e-25	2456 - 2515	100	60 / 60	plus
Harvest21	ABC21126	789	3e-25	282 - 341	100	60 / 60	minus	ABC21126
Harvest35	U35_10408	789	3e-25	449 - 508	100	60 / 60	plus

Contig Sequence (789 bp)

>U35_10408 789 Hv_44K_v2
TACCGATTGCCGGGATCCTTTTCCCGCTACCTTTCTTCCTCATGATTCTCATCAGGCAGT
ACCTGCTCCCCAAGTTTTTTGAGCCCAATGACTTGCGGGAACTGGACGCGGCTGAGTACG
ATGAACTTGAAGGGGTCCAACATGAACACACATTGGAGGAAGATGGCTCCATTTCAGGAA
GCTGCGACGGCAGGATTGACGCTGAGATATTGGATGAACTCACAACACACCGTGGGGAGT
TGAAACACAGGGTTGTGAGCCATCGTGAAGAAAGACACCTTCAGGTCCATTCAAATGCCG
TTCAGCCAAGCGTGTGAAGATAGAACAATGGCCCAGGACCGACCGAGGATTTCATCAATG
ATTCTATCGGAAATGAGGAGGGAAATCCTCAGGCAGTCGTTCTTTGCCGACTGCACTATT
ATCTTTCCGTGATAATATGCACGGTACTGGTAGTATAGCACTTTCCATAAGACAGGTAGC
AGTGAGAGCAGCAGACTGAAGGAAGTATTGCCGGAATAGCAACGGTGAGGAGTAGAAAGA
TTAGCTGATTTGGTATTGGAGGAAAACTGTCCCTCTGTGATCTGTTGTTGCTTGTGTGCC
TGGCTTTGTTCTGTTTGAGTGTACCATGTTAAAAGTATTGCTTGATAAGCAACGGCACCG
GGATTTCTCTCCCCGCCACCAACTACCGGAGTGGCATGCACCGAAGCATCCACGGGTTCG
CCGGTGAAGCTTGATAGATGAGACTAGCCTTAGCCGCCGTACGAAATAAGTCGATAATGC
AATAACACC

Homology of Contig U35_10408 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None