barSeed - Barley Seed Development Database

Probe CUST_16564_PI390587928

Source Contig U35_10417

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16564_PI390587928	Hv_44K_v2	TTGGGACCTACTCCTACTTACCACTTCTTGTGTTCATGTGTGTATTATTACGAGAAAAAA	547	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.540	1.815	1.091	0.935	0.615	0.611
Raw	2948.020	5205.240	2854.213	3567.210	885.395	963.456

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45173.1	1559	2e-24	1097 - 1156	100	60 / 60	minus	None
MLOC	MLOC_45173.2	1293	2e-24	831 - 890	100	60 / 60	minus	None
JLOC1	JLOC1_29321.1	516	8e-25	53 - 112	100	60 / 60	minus
Harvest35	U35_10417	644	3e-25	548 - 607	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_10417 644 Hv_44K_v2
GACGCCGTCGCCAATGGCTCGCCGCCGGCGACCTGGAGGGGCGCCTGAAGGACGCCNCGN
AGNCGGCGGCGCGCGCGGCGCACGCCCCGTACAGCGGGTGCCCGTCGGGGTTCGCGGTGG
CGGACGGGGAAGGGAACGTGTACGCCGGGGGCTGCCTGGAGTCCGCGGCGTACAACCCGA
CGCTGGGCCCCGTGCAGACGGCCATCATTGCGATGGTCGCCGGGGGAGGAGGCCCCGCCG
GGGACGTGGTGGCGGCGGCGCTGGTGGAGAAGGAGGGGGCGGTGGCGGCGCAGGAGGCGA
CGGCCAGGTTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTACAAATACA
GGTCGTCCGATGTGTGATGCGCGCCTCCGGACCCTCTCTGGGGTGGGGAGAGCAGGCCGC
GAGATCCAACGAGATAATGTTCATAATCTTCAAGAATAATAATACGACGAGAAAATAATC
TTTTGTGCAGATGGGTGAGCTGTAAATTCCACACGGGGCTCGGGATCCGCCGATCGGACA
CCCAGAGTTGGGACCTACTCCTACTTACCACTTCTTGTGTTCATGTGTGTATTATTACGA
GAAAAAAATAGAAGTAAAAATTATCTCCAAAAAAAAAAAAAAAA

Homology of Contig U35_10417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None