barSeed - Barley Seed Development Database

Probe CUST_16553_PI390587928

Source Contig U35_10428

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16553_PI390587928	Hv_44K_v2	GTGATAACATGTGAGAGTAAAACGGGATTGAATAAAGTGAATGAACGATTAGTCCTGTTT	486	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.363	0.534	0.970	1.414	1.201	1.186
Raw	25.583	61.695	95.097	207.030	64.523	69.713

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45269.1	1207	2e-24	95 - 154	100	60 / 60	minus	ABC21858
JLOC1	JLOC1_29390.1	1128	8e-25	82 - 141	100	60 / 60	minus
Harvest35	U35_10428	563	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_10428 563 Hv_44K_v2
GCCGCGGCGCCGCCATCCCCGGTTTAGGATGGTGCGACGCGATGTATCGCCGCTGCTGCC
AAGCCGCGTCGAGCGCCGAGAGGTCGCGGGTGCCGCCATTGGTGGCATGAGATGTTTGCT
GTTGTGCTACGAGTCGTGTCCAGAAGACCAGAAGGATCATCCGCTCAACAAATGTGGTCA
GCCTCCGCCACGGGCCGCCGAGCGTCGGAGGACGCTGCATGCGCCGGCCTTGGGTTGTGG
TCACCACCACCGTTCACAGAACGAAGCTCTGACAGGTGTTGGTTGCGCGCGCACCGGTGT
GAACAGTCACCCCCACTGGAATCTTCATGCTGCAGGAAGAATCTCGTCGAAGGGGCCGTG
GCCGCGTCGGCACGAAGCCCTTCGTCGGGATCAGCCGGGCGCCGCATCTCACCGGAGAAT
TGCCTTCGTACTACTTTTCTTCTTTTGTTTTCTCTTGGCCTGATGCTCTCGATAGAGACA
TAGTGCGTGATAACATGTGAGAGTAAAACGGGATTGAATAAAGTGAATGAACGATTAGTC
CTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None