barSeed - Barley Seed Development Database

Probe CUST_16552_PI390587928

Source Contig U35_10429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16552_PI390587928	Hv_44K_v2	ATACAGATGAGGACAAGTCATCAGAAGGAAAGTTTGATGCAGTAGCCAGGACTAGCATGG	1177	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376185	3037	2e-24	2241 - 2300	100	60 / 60	plus	ABC26520
MLOC	MLOC_47088.2	2750	2e-24	1967 - 2026	100	60 / 60	plus	ABC26520
MLOC	MLOC_47088.4	2946	2e-24	2013 - 2072	100	60 / 60	plus	ABC26520
MLOC	MLOC_47088.3	2604	2e-24	1926 - 1985	100	60 / 60	plus	ABC26520
JLOC1	JLOC1_30402.1	2816	8e-25	1906 - 1965	100	60 / 60	plus
Harvest21	ABC21268	1251	3e-25	1178 - 1237	100	60 / 60	plus
Harvest35	U35_10429	1251	3e-25	1178 - 1237	100	60 / 60	plus

Contig Sequence (1251 bp)

>U35_10429 1251 Hv_44K_v2
ACTTTTGTTGAGGTCATTGGGATTGGTAAAGGGAAGCATGATTTGACTGGATTTGTTCAG
GACATATCCAAAACAAATAAACGTCTATCTCTTTCTGCCAACATGCCTTCCATGCTTGCT
AAAGAAGACATAGCCAACGCCTTAACAGGTGATTTCAGCAGAAGTAAGGCGAAGGTAAAT
AATCTATTTTGGGAAGCTGTTTGGCCACGTTTGCTTGCAAGAGGGTGGCACTCAGAGCAG
CCAAAAGATGTCCGCACGACCAAGAATTACCTTGTGTATCTACTGCCTGCTATCAAAAAT
TTCTCAAGAAGGAAGCTCACTAAAGGCACTCACTATTTTGATTCTATCACTGACGTCCTT
AAAAAAGTGGCAGCAGACCCCACTCTTCTTGAGCTAGAGACCGATGGAATATATAACGAG
GCAACTGTTGATATGAATGGCCGGGCAACAGGCCAAGATGGTCCTTTGGATGGTGATCTG
GAGCTTCCAATGTTCACTATAATTGATACTAGCTTGGTCCAAGGGGAAGGGCCCTTCAAA
GTGAGGGCTCTGAGAAGCTTACCCGCTGATGCAAATATTAGCTTTGGACCTACAGATCAT
TCAGATAATGTGTTGAGTGACAGTTCTTCTCAGGAGCAACATAGTGATGGTAACTTGTCA
GATGACCAGGAATGTCATGGACAAGTGACAGCTCCTGTTAGTGACATTGAAATGGAATCA
GTTTACAGTACAACCAAAGAATCGCTGGTGGATTTGCTGGAAGGCATGGTGACTGCACCA
CAATATGTCTTTCCAGTTAATGGCCATTCTTCCGATGATCAGCAATCAAGCATTTCTAGT
GGTAATGGTGACAAAGCAGACTTGACATGCTGCTCTGTCATTGGAAGGAAAACTGGGAGA
CTGGTGTATTTATCTCCAAAGCGCAGAAGATTTGCTAGGTACAGTAATGACAAGATCAGC
CAACACAGCTTTTCTTTACCAGATGATAATGATTTGGAGAAAAAGATACTCAAGCCTTTA
TCCACTACATCAAAGCCAACTGTTATTGATCTTGGTTGTAGTTTCCAAACCAGAACACTG
GCAAACTGTTCCACGAAGGGGAAGCCATGTGAGCAGATAACAGAGGTTGCGAAGACTACT
ACCAATGGCAGATCTCTTGAGAAGCGGAATGTGGTGAATACAGATGAGGACAAGTCATCA
GAAGGAAAGTTTGATGCAGTAGCCAGGACTAGCATGGGAAGGACTTTGCCA

Homology of Contig U35_10429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22560.1	931	3e-125	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g62615.1	874	4e-134
Arabidopsis v10	None