barSeed - Barley Seed Development Database

Probe CUST_16549_PI390587928

Source Contig U35_22402

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16549_PI390587928	Hv_44K_v2	CTCCGATCCGTATTACTTGTGATGACTTCATTATCGCTGTGAAAAGAAGGATTTGATTAT	458	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36647.1	2009	2e-24	357 - 416	100	60 / 60	minus	ABC18402
MLOC	MLOC_36647.2	1853	2e-24	357 - 416	100	60 / 60	minus	ABC18402
JLOC1	JLOC1_23626.1	1746	8e-25	1535 - 1594	100	60 / 60	plus
Harvest21	ABC18402	538	3e-25	459 - 518	100	60 / 60	plus	ABC18402
Harvest35	U35_22402	538	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_22402 538 Hv_44K_v2
AATGGTTGATGCACTTATGCATCCTGCAGAATCCTTGGGTTTGAGGTTTGATGGGCAGCT
GTATCAAGTGGAGCTTGTGCTGCATCTCTAGAACCTGTATGATGTTTTCCTATGAATATT
TTCCTAGAGATAACTGTTTAGATCTAGGAATGCAGTATTGTGTAGTTTTTCTAGTCACAA
CACTTGGATAGTAAATTGAAGATCTCGCTCACAATATTTAGATGATCAAGATCTCAATAT
TGTTAATTTCAGCTGCCAGAATGGACATTGTGATGATGCTGAAAAATGGTTCTTCACTGT
CAAGTGCGCATGGGTGCAAGACCTGTCACTGATATCTGAAAGCAACGGTGATGTGGAGTG
GGTTTGTCCACGTATGTGTTGAGATGTATATCCTTTCTCAAATTCGTATATTAGCAAAGA
ATGTCTGTCAATATCATCCGAGTAAAGATTGCTATTCCCTCCGATCCGTATTACTTGTGA
TGACTTCATTATCGCTGTGAAAAGAAGGATTTGATTATCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_22402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None