barSeed - Barley Seed Development Database

Probe CUST_16548_PI390587928

Source Contig U35_22403

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16548_PI390587928	Hv_44K_v2	ACATCTACGAACATTGGACGAACGGAAAAACATTCGGACATCACCTCTGCTCTGGGTATT	1173	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17764.7	1254	7e-23	272 - 331	98	59 / 60	plus	ABC47523
MLOC	MLOC_17764.5	2811	7e-23	2084 - 2143	98	59 / 60	plus	ABC47523
MLOC	MLOC_17764.2	3412	7e-23	2430 - 2489	98	59 / 60	plus	ABC47523
MLOC	MLOC_17764.6	1987	7e-23	1055 - 1114	98	59 / 60	plus	ABC47523
MLOC	MLOC_17764.3	3749	7e-23	2761 - 2820	98	59 / 60	plus	ABC47523
MLOC	MLOC_17764.1	3466	7e-23	2447 - 2506	98	59 / 60	plus	ABC47523
JLOC1	JLOC1_12268.2	3883	4e-23	2778 - 2837	98	59 / 60	plus
JLOC1	JLOC1_12268.1	3400	4e-23	2295 - 2354	98	59 / 60	plus
Harvest21	ABC18397	1245	3e-25	1174 - 1233	100	60 / 60	plus
Harvest35	U35_22403	1245	3e-25	1174 - 1233	100	60 / 60	plus

Contig Sequence (1245 bp)

>U35_22403 1245 Hv_44K_v2
CGCCTTGCTGCTTGGGGTGTGATAAATGTTGTAAAGGTAGCATGGTTAGAAGACTGCAAT
AAAACAAAAACGGAAATCAAAGTATCCACAGCTCATTTGGCTAGCGAGTTACTTGTGAAA
GAATTTCCGTTTGTGGGCATGGAAAAATCTGCTGCTACACGTGAAACAAAGGCAGCCAAA
AGTTCACATGGAATATTCCATGTTCCAACTTTCAATGATTCACATGATAAGCAGCTTGCG
AAAGATCTGTCATCTGAAAGAAATCCAGCCAAGGGCAAACATGAAAACATGAATAATACC
CGGGCAGCAACTAGGTCTGCAAAATCAAGCCAACAAAATGGATTGACCAGTACTGGCAAA
GCAACTTCTTCTGCAGTGAAGTCACAGAGTAGCACTTCTTCAAATATTTTCAAAGGGAAA
ACATTTTGTTTCTCAAATTCATTTTCTCATGATCGGAGAGCTGAAGTTATCGATTGGGTC
AGAGAAGGGGGAGGCACTATGGTGGCGGATGATGCACAAGAAACTGCTGTGGATTTCATA
ATTGAGTGCCATGGACAGAACAGCATGCAATGCGACTACTCTCATTCAACCGTTGTTTCA
ACTCAATGGATAGCCTCATGTTTTGAGTTGGGTTACTTGCAAGATGTTGGAAGTCATCCT
ATCTTCTCTCCTTTGCGGTGTCGCATCCCATTCCCGGGGTTTGAAGACTTCCGTTTCTGT
GTTTCACAGTATGATGAGAAAGAGAGAGTTCTGCTTAAGAACCTTTGTCTTACTCTAGGA
GCTAAATTCACAGAGAAAGCATCAAAAAGAGTGAGCCATCTTATCTGTAAATTTGCCAGC
GGTCCAAAGTATGAGGCATACCATAATAAGAGAATTCCAACCATTACCATAGAGTGGCTC
TTCGAATGTGTGAGACAGGACACCATTATCCCTTATGACCAGTTTCAGCCGAAACCACCT
ACTTCTCAGGACAAGGATGCCGGTATGTGCACTGTTAGTCAATTTCCTACACAAGCCGCC
AATACGACCTCTAGATTTGATTGCCCTGAGCCACTTAGTGAACCTCAAGTGCCAAGAAGC
AGTTCAAAACACAGCTCAGGCTCCTCTATTACTGAGGAGAAAATTGCTTCTTCTGTTAAC
AAAAGAAGACGATCAACAGCCAAGGCTAATGATACATCTACGAACATTGGACGAACGGAA
AAACATTCGGACATCACCTCTGCTCTGGGTATTGCAGACTCCATA

Homology of Contig U35_22403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g08660.1	902	0.0	protein\|TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed
Brachypodium v1_2	Bradi4g23417.1	984	0.0
Arabidopsis v10	AT1G77320.1	972	7e-59	\| Symbols: MEI1 \| transcription coactivators \| chr1:29056740-29062710 FORWARD LENGTH=972