barSeed - Barley Seed Development Database

Probe CUST_16544_PI390587928

Source Contig U35_247

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16544_PI390587928	Hv_44K_v2	TCGTCTCTTCAGATGTTGGTGGTGGTAAAATGCAGTGGTATGCATTTCACAAGGAACCTG	939	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.132	2.157	1.120	0.780	0.689	0.681
Raw	65.927	99.547	46.744	49.419	15.315	16.581

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376891	2570	2e-24	1099 - 1158	100	60 / 60	plus	ABC03181 ABC41628
MLOC	MLOC_64943.1	2570	2e-24	1382 - 1441	100	60 / 60	minus	ABC03181 ABC41628
MLOC	MLOC_64943.3	2584	2e-24	1278 - 1337	100	60 / 60	minus	ABC03181 ABC41628
MLOC	MLOC_64943.4	1649	2e-24	989 - 1048	100	60 / 60	minus	ABC03181
MLOC	MLOC_64943.2	2062	2e-24	1382 - 1441	100	60 / 60	minus	ABC03181 ABC41628
JLOC1	JLOC1_42686.3	2036	8e-25	624 - 683	100	60 / 60	plus
JLOC1	JLOC1_42686.2	2100	8e-25	602 - 661	100	60 / 60	plus
JLOC1	JLOC1_42686.1	2675	8e-25	1174 - 1233	100	60 / 60	plus
Harvest21	ABC03182	1011	3e-25	940 - 999	100	60 / 60	plus
Harvest21	ABC03181	2420	3e-25	975 - 1034	100	60 / 60	plus	ABC03181
Harvest35	U35_254	2420	3e-25	975 - 1034	100	60 / 60	plus
Harvest35	U35_247	1011	3e-25	940 - 999	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_247 1011 Hv_44K_v2
CAGAGTCAGTCAACTCAGCACTGACTGACAGGCAACGAGCATACTCTGCTCATCACAACC
CAAGCTTACACTTCCTGGCTCGTCGGTTCGTCATGCCAAGCTGCACGCGAGTCTCTCGCG
CGGGCACGGCCATCTCCGCCCCGCCCGTCACCCCCTCCTCCTCCTCCTCCCGGACACTAA
TCGGCTTACACGCCCTCCACTCCCAGCGCGCGCCGTATGGGCGCGGGCTTCGCCTCTCTG
GCCCCGTGAGGTGCGCTGCGGAGGTCGTTGACGACGCGGCAATGCACGCGCCGGAGCCCA
AGCCGCGCGTCCTGGTCGCCGGCGGGGGGATCGGCGGCCTCGTCTTCGCGCTCGCGGCCA
GGCGGAAGGGCTTCCAGGTGCTCGTGCTGGAGAAGGACATGAGCGCCGTCCGCGGGGAGG
GCAAGTACCGGGGCCCCATCCAGCTGCAGAGCAACGCGCTCGCCGTGCTCGAGGCCGTCG
ACATGCCCGCCGCCGACCAGATCATGGACGCCGGGTGCATCACCGGCGACCGCGTCAACG
GGATCGTCGACGGCATCTCAGGCTCCTGGTACATCAAGTTTGACACCTTCACTCCTGCGG
CTGATAGGGGGCTCCCGGTCACAAGGGTCATTAGCCGCATGACGCTGCAGCAGATTCTTG
CTCGTGCCGTTGGCGACGATGCTATAATGAATGACTGCCACGTTGTTGACTTTACCGATG
ATGGCAACAAGGTTACTGCAATATTGGAGGATGGGCGGAAATTTGAAGGTGATCTCTTGG
TTGGAGCAGATGGCATATGGTCAAAGGTGAGGAAGTCACTTTTTGGCGAAACAGACGCAT
CTTATTCAGAATACACTTGCTACACCGGAATTGCAGACTTTGTGCCTCCTGATATTGACA
CAGTAGGGTACCGAGTGTTTCTTGGTCACAAACAATATTTCGTCTCTTCAGATGTTGGTG
GTGGTAAAATGCAGTGGTATGCATTTCACAAGGAACCTGCTGGTGGTACCG

Homology of Contig U35_247 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g37619.2	549	1e-134	protein\|zeaxanthin epoxidase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g11750.1	668	2e-136
Arabidopsis v10	AT5G67030.1	667	6e-122	\| Symbols: ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP \| zeaxanthin epoxidase (ZEP) (ABA1) \| chr5:26753745-26757090 REVERSE LENGTH=667