barSeed - Barley Seed Development Database

Probe CUST_1653_PI390587928

Source Contig U35_26027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1653_PI390587928	Hv_44K_v2	TGGAAAAGGAATGTGCAGAGGAAGCTAGGAATTCAGCGGTTTCCGCCGACGGGGAGGTAT	76	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371534	3046	2e-24	1257 - 1316	100	60 / 60	plus	ABC20615
MLOC	MLOC_18286.1	2245	2e-24	486 - 545	100	60 / 60	plus	ABC20615
MLOC	MLOC_18286.2	1478	2e-24	467 - 526	100	60 / 60	plus	None
JLOC1	JLOC1_12649.1	2263	8e-25	480 - 539	100	60 / 60	plus
Harvest21	ABC23602	404	3e-25	77 - 136	100	60 / 60	minus
Harvest35	U35_26027	404	3e-25	77 - 136	100	60 / 60	minus

Contig Sequence (404 bp)

>U35_26027 404 Hv_44K_v2
CTCTCGTCTTCAGACACCACTTGTCCGGCATCCACTGCTTCGCCGCCGTCATCTTCAACC
ACGCCTCGAGGGCGGCATACCTCCCCGTCGGCGGAAACCGCTGAATTCCTAGCTTCCTCT
GCACATTCCTTTTCCAAATTGGCCTCACCTTCGTCTTTCTCTTCTTTGTGGAGGCCGCCG
TCCCCTTCATTGTCGACCTGGCCGACACTGGCAGTGGCCGCCGCCGGGGAACCCCAGAAG
CGCGTGGCGAGCTCCGCCATGCGCACGGGGTCGGATCTGCAGCGCATCAGCAAAAGGGCG
TTCCTGGGCGGGATGCAGACGCTGACCCGTCCCTCCTCCTCCTTGCCTCCGACCAGCAAG
ATCTCGTCTTCCTTCTCCACCTCCACCGCGCCGACGACGACGCG

Homology of Contig U35_26027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None