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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16538_PI390587928Hv_44K_v2TAGGAGTACATACATACTACATTGTTGTGCCTATTAACACGTGTTCATATTGCAAGACAG2322GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.2752.7941.1270.7990.2960.418
Raw 291.346570.042196.657222.81629.51345.198



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37689125702e-242447 - 250610060 / 60plus ABC03181 ABC41628
MLOCMLOC_64943.125702e-2434 - 9310060 / 60minus ABC03181 ABC41628
MLOCMLOC_64943.220622e-2434 - 9310060 / 60minus ABC03181 ABC41628
JLOC1JLOC1_42686.221008e-251947 - 200610060 / 60plus
JLOC1JLOC1_42686.126758e-252522 - 258110060 / 60plus
Harvest21ABC0318124203e-252323 - 238210060 / 60plusABC03181
Harvest21ABC416283971e-2337 - 969859 / 60minusABC41628
Harvest35U35_25424203e-252323 - 238210060 / 60plus



Contig Sequence (2420 bp)

>U35_254 2420 Hv_44K_v2
CAGCCCAGGCTTAGTTAGCACTTCCCCTCCCTCCGCCCACAGCCTCCACTTGCCCAGCAA
CGCTCTTCTGGTTCGCCAATCCCGCGGGAGCTCAGTAATCGGACCACCGGGGTCCATGCC
CATGGCGCTCCTCTCCGCCACCTCCCCGGCCAAGACGCTCTTCTGCCACGAGGAGCAGTA
CTCGGCGCAGAGCGGCGTCCTCCTCTCGGCCCCGCAGCCCAGGAAGCAGAGGTCGCGCCC
CAGCGCCAGGCTGGTGGCGGCAATGCGGCCGGCGGCCGCGGCCGCCACGGAGACGGCCCC
GGCGTCGTCGTCGTCGCCGGGGCCCGTGAAGGGGAAGCCTCGCGTGCTGGTGGCGGGCGG
CGGCATCGGCGGGCTGGTGCTGGCGCTGGCGGCCCGGCGCAAGGGTTACGACGTGACGGT
GTTCGAGCGGGACATCAGCGCGGTGCGCGGGGAGGGGCAGTACCGCGGCCCCATCCAGAT
CCAGAGCAACGCGCTGGCGGCCCTGGAGGCCATCGACATGTCCGTGGCCGAGGAGGTCAT
GCGCGAGGGCTGCGTCACCGGCGACCGCATCAACGGCCTCGTCGACGGCATCTCCGGCTC
ATGGTACATCAAGTTTGACACCTTCACTCCTGCGGCTGATAGGGGGCTCCCGGTCACAAG
GGTCATTAGCCGCATGACGCTGCAGCAGATTCTTGCTCGTGCCGTTGGCGACGATGCTAT
AATGAATGACTGCCACGTTGTTGACTTTACCGATGATGGCAACAAGGTTACTGCAATATT
GGAGGATGGGCGGAAATTTGAAGGTGATCTCTTGGTTGGAGCAGATGGCATATGGTCAAA
GGTGAGGAAGTCACTTTTTGGCGAAACAGACGCATCTTATTCAGAATACACTTGCTACAC
CGGAATTGCAGACTTTGTGCCTCCTGATATTGACACAGTAGGGTACCGAGTGTTTCTTGG
TCACAAACAATATTTCGTCTCTTCAGATGTTGGTGGTGGTAAAATGCAGTGGTATGCATT
TCACAAGGAACCTGCTGGTGGTACCGATCCTGAGAATGGCAAAAAGAAAAGACTGCTCGA
GATATTTAGCGGTTGGTGTGATAATGTCATAGATCTGCTAAATGCAACTGAAGAGGAAGC
GATTCTGCGCCGGGATATATACGACCGGCCACCTACTATCAACTGGGGAAAAGGTCGTGT
CACCTTGCTTGGTGACTCTGTACATGCTATGCAGCCAAATCTGGGACAGGGTGGCTGCAT
GGCTATTGAGGATGGTTACCAGCTGGCTGTAGAGCTTGAGAAGGCATGGGAAGAGAGTGT
CAAGTCTAGAACTCCTGTGGATGTTATTTCCTCCTTGAGGAGTTATGAGAAGGAGAGAAA
GCTACGTGTTGCTATCATACATGGATTGGCAAGAATGGCTGCAATCATGGCTACCACTTA
CAGGCCATATCTAGGTGTGGGTCTGGGACCTTTGTCGTTTTTGACAAAGTTGAGGATACC
GCATCCTGGAAGAGTTGGCGGCAGATTTTTCATCAAGGTTGGGATGCCTTTGATGCTGAG
CTGGGTTTTAGGTGGCAACAGCTCAAAGCTAGAAGGAAGACCGTTAAGTTGCCGGCTTTC
TGATAAGGCAAGCGACCAGCTTGGTCGATGGTTTCAGGATGACGATGCACTGGAACAAGC
TATGGGTGGAGAGTGGTACCTCTTCCCTATGAGCTCTGGAGATGACTCCGCCTTGCAGCC
CATTCGTTTGATCAGGGATGAGCAGAGGACACTCTCTATTGGAAGCAAACCAGATCCGAG
CAATTCTGATTCTTCGTTGTCGTTGCCCTTGCCACAAGTATCAGAGATCCATGCTACTAT
CACATGCAAGAACAAGGGTTTCTATTTGACCGATCTCGGAAGCGAGCACGGTACATGGTT
TAATGACAACGAAGGTAGGCGCTACCGGTTACCTCCAAACTTCCCGGTTCGTTTTCACCC
TTCGGATGCCATCGAGTTTGGTTCAGACAAGAAGGCCATGTTCCGGGTGAAGGTGCTCAG
CGCGCTCCCATACGACTCGGCGAGAGGCGGGGGAGAAGTTCTGCAGGCAGCATGAGTGGG
GACTTCAGCCACCCCTTGTCACCAGCCACTGTAGCATTCTTCAGTAAAAAAACAGCCGAC
ACTGCATCACCGCCAAGAAAAGGAATTGTAATTTTTGTACTCATCAAGATATGCCAGAAC
AGGGTTTTGAATAGCTTCTGACAGAGTTACTACGTCGCAGTTCGATGGAAAGAACTGAGG
GTGTACAATAGGGGTAGGCAATTTTAGCTGTTGCCACTGTAATAGGAGTACATACATACT
ACATTGTTGTGCCTATTAACACGTGTTCATATTGCAAGACAGAAAAAAAAATTAATGCTG
CAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_254 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g37619.16600.0protein|zeaxanthin epoxidase, chloroplast precursor, putative, expressed
Brachypodium v1_2Bradi5g11750.16680.0
Arabidopsis v10AT5G67030.16670.0| Symbols: ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP | zeaxanthin epoxidase (ZEP) (ABA1) | chr5:26753745-26757090 REVERSE LENGTH=667