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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16535_PI390587928Hv_44K_v2GAGGATGCATATGAGAATCTAAGCACCGGCTATACATACTTTGTTTGCAGCTGGAAAAAA716GeneList: greenyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 14.4608.9741.5640.6480.3070.435
Raw 425.044445.76363.33644.6656.03410.766



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC006468663e-25717 - 77610060 / 60plus
Harvest35U35_2577873e-25717 - 77610060 / 60plus



Contig Sequence (787 bp)

>U35_257 787 Hv_44K_v2
CAAGCTAGCTATCGGCTCCCCACCTAGCAATTTACGTACCACCATGGCCCCAGCCGTGAT
GGCTTCGTCAGCCACCACCGTCGCCCCCTTCCAGGGGCTCAAGTCCACCGCGGGCCTCCC
CGTCAGCCGCCGCTCCGGCAGCGCCGGCCTCAGCAGCGTCAGCAATGGCGGAAGGATCAG
ATGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTGTCTTACTTGCC
ACCCCTCTCCACGGAGGCCCTATTGAAGCAGGTCGACTACCTGATCCGCTCCAAGTGGGT
GCCCTGCCTCGAGTTCAGCAAGGTTGGCTTCGTCTTTCGTGAGCACAACAGCTCCCCCGG
GTACTACGATGGTCGATACTGGACAATGTGGAAGCTGCCTATGTTCGGGTGCACTGACGC
CACACAGGTGCTCAACGAGGTGGAGGAGGTCAAAAAGGAGTACCCTGACGCCTACGTCCG
TATCATCGGCTTCGACAACCTGCGGCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAGGCC
ACCGGGTTGCGAGGAGTCCGGCAAGGCATAAAGTGCAAGTTGAAGTAACCAATATACATG
CCATGTTAGTTCACATTGGTTGGTCGGCAGCTCTGCTTTCTCAATTTTACTTCTCGTTCC
AATCATATGTGAATATACGAGCATATGTATGTAAGCACCTACCAACGTAGGTCGAGGAGG
ATGCATATGAGAATCTAAGCACCGGCTATACATACTTTGTTTGCAGCTGGAAAAAAAAAA
AAAAAAA



Homology of Contig U35_257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g17600.11769e-108protein|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2Bradi3g26391.11763e-115
Arabidopsis v10AT1G67090.11801e-79| Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180