barSeed - Barley Seed Development Database

Probe CUST_16533_PI390587928

Source Contig U35_259

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16533_PI390587928	Hv_44K_v2	CAGGAAAAATAATGGAGATCCGTTTTGATGTCCTAGCCATACACAAAAGAAAATCTAGTT	3240	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.023	4.789	1.241	0.694	0.272	0.372
Raw	625.242	823.253	179.419	167.428	21.955	32.846

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36667.1	3312	3e-21	3170 - 3230	97	59 / 61	plus	ABC00491 ABC01483 ABC49689
JLOC1	JLOC1_23645.1	3557	2e-21	3142 - 3202	97	59 / 61	plus
Harvest21	ABC01483	3333	1e-23	3241 - 3300	98	59 / 60	plus	ABC01483
Harvest35	U35_259	3333	3e-25	3241 - 3300	100	60 / 60	plus

Contig Sequence (3333 bp)

>U35_259 3333 Hv_44K_v2
CCGTTCCGCGGCGTCTCCACCCTGGCGCCCAGACCGGCGGTGGCCGGGTCGCGCCCCCGC
GCGCGCCCGGCGGGGCAGTACACGCCCGGCCGGCCCGTCTCCGTGTCGGCGCTGCAGCCC
AGCGACACCTTCCCGCGGCGGCACAACTCGGCCACCCCCGCCGAGCAGGCCGTTATGGCG
TCCGAGTGCGGCTTCAACACCCTCGACGCGCTCATCGACGCCACCGTCCCGGCCGCAATC
CGCGCGCCGCCCATGCAGTTCACCGGCAAGTTCGACGCAGGCTTCACCGAGTCGCAGATG
CTCGACCACATGGCGCACCTCGCCTCCATGAACAAGACCTACAAGTCCTTCATCGGGATG
GGCTACTACAACACCCACATCCCCGCCGTCATACTGCGCAACCTCATGGAGAACCCCGCG
TGGTACACGCAATACACGCCTTACCAGGCGGAGATCGCCCAGGGCCGCCTCGAGTCGCTG
CTCAACTACCAGACCATGGTCGCCGACCTCACCGGCCTGCCCATGTCCAACGCCTCGCTG
CTCGACGAGGCCACCGCCGCCGCCGAGGCAATGGCCATGTGCCTCGGCATCGTCAAGTCC
AAGAAGAAGACCTTCCTCATCGCCTCCAACTGCCACCCGCAGACCATCGACATCTGCAAG
ACGCGTGCCACCGGCTTCGACATCAACGTCGTCGTCTCCGCCGCCAAGGACTTCGACTAC
AGCAGCGGCGACGTCTGCGGCGTGCTCGTGCAGTACCCCGGCACCGAGGGGGAGGTGTTG
GACTACGCCGAGTTCGTCAAGGACGCGCACGCGCACGGCGTCAAGGTGGTGATGGCCACT
GACCTGCTCGCGCTCACCACGCTGCGCCCGCCGGGCGAGATTGGCGCCGACATCGCCGTG
GGCTCCGCGCAACGCTTCGGCGTGCCCATGGGGTACGGCGGCCCGCACGCTGCCTTCCTC
GCCACCTCCCAGGAGTACAAGAGGCTGATGCCCGGCCGCATCATCGGTGTGAGCGTCGAC
TCCAGCGGCAAGCCCGCGCTCCGCATGGCAATGCAGACCAGGGAGCAGCACATCCGGCGA
GACAAGGCCACCAGCAACATCTGCACCGCGCAGGCGTTGCTCGCCAACATGGCGGCGATG
TATGCCGTCTACCATGGTCCGGCTGGCCTGAAGGCGATCGCCGACCGTGTCCATGGACTG
GCTGGTACTTTCGCCCATGGTTTGAAGAAGCTCGGGACAGTGACAGTGCAGGAGCTGCCC
TACTTTGACACGGTCAAGATCACTTGCGCCGATGCTAATGCCATTGCTGAGGAGGCCCGC
AAAAACGAGATGAACCTTCGCGTTGTTGACGCAAACACGATCACCGTTGCCTTTGATGAG
ACCACCACCTTGGAGGATGTTGACAAGCTGTTCAAGGTTTTCTCTGGTGGCAAGCCAGTG
GGCTTCACAGCTGAATCCATTGCGCCTGAGGTCTCAAGCTCAATTCCTCCTAGCCTTGTG
CGCGACAGCCCCTACTTGACCCACCCAATCTTTAGCATGTACCACACAGAGCACGAGCTC
CTCCGTTACCTGCACAAGTTGCAATCCAAGGATCTCTCACTGTGCCACAGTATGATCCCT
CTTGGTTCTTGCACCATGAAACTAAATGCTACCGTCGAGATGATGCCCGTCACCGATCCC
AAGTTCGCCAACATGCACCCATTTGCCCCTATTGATCAAGCTGCAGGCTATCATGAAATG
TTTGACAACCTGGGTGATCTGCTGAACACCATCACTGGTTTTGATTCGTTTTCTTTGCAA
CCGAATGCTGGTGCTTCAGGAGAGTATGCTGGACTGATGGTTATTCGGGCATACCACAAG
GCAAGAGGAGACCACCACCGAAATGTCTGCATCATTCCCGTCTCTGCGCACGGTACAAAC
CCTGCAAGTGCTGCTATGTGTGGAATGAAGATTGTTGCTGTTGGAACTGATGCCAAAGGT
AACATTAACATTGAGGAGTTGAGGAAAGCTGCTGAAGCAAACAAGGACAACCTGTCTGCT
CTGATGGTTACCTATCCTTCAACCCATGGAGTCTACGAAGAAGGCATTGATGAGATTTGC
AGGATTATTCATGATAACGGCGGTCAGGTCTATATGGATGGAGCTAACATGAACGCTCAG
GTTGGGTTGACAAGCCCTGGTTTTATTGGAGCAGATGTTTGCCATCTTAACCTTCACAAG
ACATTTTGCATTCCACATGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGTTAAGAAG
CACTTGGCACCATTTTTGCCATCTCATCCAGTGATCCCCACTGGTGGCTTCCCTCTCCCT
GAGAAAACCGACCCTCTTGGTTCCATTTCTGCTGCTCCATGGGGATCTGCTTTGATTCTT
CCAATTTCGTACACCTACATAGCCATGATGGGCTCTCAAGGACTAACTGAAGCCTCAAAG
ATTGCGATCCTGAACGCGAACTACATGGCAAAGCGTCTGGAGAAACACTACCCAGTTCTT
TTCCGTGGAGTCAATGGAACTGTTGCCCATGAGTTCATTATTGATTTAAGAGGATTCAAG
GCAACTGCCGGTATTGAGCCCGAGGATGTGGCGAAGCGCTTGATGGACTATGGATTCCAT
GGACCAACCATGTCGTGGCCTGTTCCAGGCACACTTATGATTGAACCTACTGAAAGTGAA
AGCAAGGCTGAACTAGACAGGTTCTGTGATGCCCTTATCTCCATCAGAGAGGAAATTGCA
CAGGTAGAAAATGGAAAAGCAGATGCGCACAACAATGTCCTGAAGGGTGCTCCTCACCCA
CCCCAAATCCTGATGGGTGATGCATGGACTAAGCCATACTCCAGGGAGTATGCTGCATTC
CCCGCGGCGTGGCTTCGTGGTGCCAAGTTCTGGCCAACAACATGTCGTGTGGACAACGTG
TACGGGGATCGCAACCTGATCTGCACTCTGCAGCAGGAGGTGGCGGAGGAAGCTGCAGCT
GCGACCGCGTAATCTTTTGATGATGACGATCCTGGTGTGTGAACTGTGATACTGTGTCAA
GAAGTTATGATGCTTCCTGTAGGAGGGAAGCATGCTTGCTTCTAAATCCCTCATGTACTG
TATATATTCTCCTCAGATGCCACCTTCTCCTGTATCCTCTGTACCCCCACGCTGCCTCCC
CATTCCCATTTGAAAGTGAAATTAGCTATATTGGCTAGCATTTCTACTCTTCTCTGAATA
CAGGAAAAATAATGGAGATCCGTTTTGATGTCCTAGCCATACACAAAAGAAAATCTAGTT
ATTTTTAGATTGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g51410.1	1034	protein\|glycine dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi2g48010.1	1034
Arabidopsis v10	AT4G33010.1	1037	\| Symbols: AtGLDP1, GLDP1 \| glycine decarboxylase P-protein 1 \| chr4:15926852-15931150 REVERSE LENGTH=1037