barSeed - Barley Seed Development Database

Probe CUST_16528_PI390587928

Source Contig U35_16104

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16528_PI390587928	Hv_44K_v2	TGTATTGAATTCTCAGTGTGAATAATAGAGCGATCTCGTTGAACCTTTGCGCCGAAAAAA	2873	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65469.1	2071	3e-22	1 - 56	100	56 / 56	minus	ABC04984
JLOC1	JLOC1_43088.1	2101	1e-22	1921 - 1976	100	56 / 56	plus
Harvest35	U35_16104	2944	3e-25	2874 - 2933	100	60 / 60	plus

Contig Sequence (2944 bp)

>U35_16104 2944 Hv_44K_v2
GACCGCTTGCTTGCAGCTGCACAACTTGCTACTCTCAGTCACAGTCCTCGTTCCTCCCGA
GCCAGCTGTTTTCCCCCATGGCCGGCGATGGCGGCAGCGACCGCGACGCCGGCGGCGAGT
GGATCTGGGTGCGCCGACCGCAGGAAGCGGAAGCTGCGGCTGCGGCGGCTGGGTGGCCGG
CGGAGGAGGCGCGGCCTCTGAAGGTGGTGTTCGCGTCCCCGGCGAGGTACTTCACCGACG
CGGCGCCGATCGGGAACGGCCGTCTCGGCGCCTTGGTCTGGGGCGGCGTCACCTCCGAGA
AGCTCCAGCTCAACCATGATACATTATGGACGGGCGGACCTGGTAATTATACAAACCCCA
AAGCACCTACTGTTCTTTCTGAAGTAAGGAGCCTTGTTGACAAGGGACTGTATCCTGAAG
CTACAGCTGTTGCTTATGGTCTGTCTGGTGACGAGACGCAGAGTTACCAGCCTCTCGGTG
ATATTGATCTTGCCTTTGGTGAGCATATCAAGTATACAAATTATACAAGATACCTTGATT
TGGAATCTGCGACAGTTAATGTCACATACAGTGTTGGGGAAGTAGTGTACTCAAGGGAAC
ACTTCTCCTCAAATCCACATCAAGTAATTGCGACTAAAATCTCTGCAAACAAACCAGGAG
CTGTCTCCTGTACAGTATCTTTAGCTACACCACTAGATCACCGGATTCGTGTAACAGATG
CAAATGAAATAATCATGGAGGGTAGCTGCCCAGGAGAAAAACCCGCGGGAGATGGCAATG
CATCTGATCATCCTCCAGGAATGAGATTTTGTGCAATTCTCTACCTGCTGATGAGTGGTG
CCAATGGCCAAGTGCAAGTATTAAATGATAAGATGCTGAAACTTGATGGTGCCGACTCAG
CAGTTTTGCTCCTTGCTGCTGCAACCTCATTTGAAGGGCCATTTGTCAAGCCTACTGAAT
CGACACTTGATCCAGTGGCATCAGCATTCACAACATTAAATATGGCTAGGAGCATGTCAT
ATGCACAGCTAAAAGCTTATCACATGGATGATTACCAGAGTCTTTTCCAGCGCGTGTCCT
TGCAACTTTCACGAAGCTCTAATGATGTACTTGGAGGTAGCACTTTGGCCCACTTACCTG
AGAATATCTCTCAGGATACTGCGGTATCTGATTGCACTGTACAGATGGTTGACTGCTCAA
GGTTAAACGAGCTTAATAATTCAGAGAAGCCTACTGTGGACAGAATTATAAGTTTTAGAC
ATGATGAAGATCCTTCTCTGGTAGAACTTCTGTTTCAGTTTGGGCGCTATCTACTCATTT
CTTGTTCGAGGCCTGGAACTCAGGTTTCCAATCTGCAAGGAATATGGAACAACGAGACTA
ATGCACCATGGGGTGCAGCTCCCCATCCAAATATAAATCTACAAATGAATTACTGGCCAT
CACTTCCTTGCAACCTTAGTGAATGCCAAGACCCACTATTCGACTTCATTGGATCCCTTT
CGGTCAATGGGGCTAAGACGGCAAAAGTGAATTACGGAGTTAGTGGCTGGGTTAGTCACC
AAGTCACAGACTTGTGGGCAAAAACATCACCGGATGTTGGTGATCCTTCATGGGCTCTAT
GGCCAATGGGTGGGCCATGGCTTGCTACACACCTGTGGGAACACTACAGTTTTACAATGG
ACAGAGAATTTTTGGAGAGAACAGCGTATCCACTTTTGGAAGGATCTGCCTCCTTTCTGT
TGTCCTGGTTGATTGAAGGCCAAGAAGGCTATCTGGAGACCAATCCTTCTACTTCCCCAG
AGCATTATTTTATTGCTCCGGATGGCAAAAGAGCATCTGTGAGCTATTCAACAACTATGG
ACATGTCAATTATTAGAGAAGTATTCTCAGCTGTTCTTCTGTCTGCTGATATTTTAGGAA
AATCCAGCACTGATGTGGTTCAGAGGATAAAAGCGGCACTACCAAGGCTCCCACCAATAA
AAATTGGTAGAGATGGTACAATCATGGAGTGGGCACGAGATTTTCAGGATGCTGAGCCTC
ACCACAGACATGTATCTCATCTGTTTGGTCTTTATCCTGGACATACCATGACACTTGAGC
AAACACCTGACCTCTGCAAGGCTGTTGCCAATACTCTTTATAAAAGAGGTGATAAAGGCC
CTGGGTGGTCTACTTCATGGAAGATGGCCCTGTGGGCTCATCTTCACAACAGTGAGCATG
CATACAAAATGATTCTGCAGCTAATCACTTTGATAGATCCGAATCACGAGCGTGATAAGG
AAGGAGGTCTATACAGCAATTTGTTCACGGCGCATCCACCATTCCAAATTGATGCAAATT
TCGGATTCCCAGCTGCATTGTGCGAAATGCTTGTGCAGAGCACCGGGAGTGATCTGTACC
TGCTCCCTGCTCTGCCCCGCAACAAGTGGCCCCACGGCAGTGTCAAAGGTCTGAGGGCCC
GAGGCGGGGTGACGGTCAACATCTGCTGGAAAGAAGGTAGCCTGCATGAAGCGCTTGTAT
GGTCTGGCAGCAGCGGGAATTCGCTTGCGAGGGTCCACTATGGCGACCGCTCTGCCATGA
TCAGTACCTCCCCAGGTCAAGTTTACAGGTTCAACTCGGAGTTGAAGTGCTTGGAGACCT
GTCCACTGTGAGAATGTACGTGTGCTGGTTCTGCAGTCCAAAGGCACAATCTGTTGCGAC
ATAATAGTAATTAACTGAATTCCCAGTGAGAACAATAATGGACCTATTCTAAGGCACAAT
CTGTCGTGACAAAATTTACTGGATTCTCACTTGAGAACAATAATGGAGCTATCCTAAGGC
ATAATCTGTTGTGACAAAATTTACTGAATTCTCAGTGAGAACAATAATGGTACTGTATTG
AATTCTCAGTGTGAATAATAGAGCGATCTCGTTGAACCTTTGCGCCGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_16104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g19880.1	852	protein\|alpha-1,2-fucosidase, putative, expressed
Brachypodium v1_2	Bradi3g25226.2	858
Arabidopsis v10	AT4G34260.1	843	\| Symbols: FUC95A \| 1,2-alpha-L-fucosidases \| chr4:16398130-16401591 FORWARD LENGTH=843