barSeed - Barley Seed Development Database

Probe CUST_16527_PI390587928

Source Contig U35_16105

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16527_PI390587928	Hv_44K_v2	TGCCTCCATAGCAGACAGTAACACTATTTCAGATTGTCAGAAAGTTGTTACCAGAAGATT	863	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.931	1.991	1.314	0.622	0.152	0.174
Raw	495.963	784.827	460.280	357.940	29.365	36.684

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_5703.1	1327	8e-25	1174 - 1233	100	60 / 60	plus
Harvest21	ABC04958	973	3e-25	864 - 923	100	60 / 60	plus	ABC04958
Harvest35	U35_16105	973	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (973 bp)

>U35_16105 973 Hv_44K_v2
GTACCTGACGATCTACGTCATCGACAGGTTCCTCTCCTTGCAGGCGGTGCCCCGGCGAGA
GCTGCAGCTCGTCGGCATCGCGGCCATGCTCATCGCCTGCAAGTACGAGGAGATCTGGGC
GCCCGAGGTAGGCGATTTCATATCCATCGCCGATAACTCCTACTCGAGGCAGCAGATCCT
GTCCATGGAGAAGAATATCCTGAACAGCATGGCTTGGAACCTCACGGTGCCCACCCCGTA
CGTCTTCCTGGTGCGGTTCGCCAAGGCAGCCGGGGGCGACAAGGAGCTTGCAAACATGAT
ATTCTTCTTCGCCGAGATGGCGCTCATGGAATACAAGCTGGTCACCGTGCGCCCCTCGCT
GCTGGCAGCGTCTGCCGTGTACGCTGCTCGGTGCACGCTGAAAAGAAGCCCTATCTGGAC
AGAAACCCTTAAGCATCACACCGGACTAGCTGAACCACAGCTCCTGGAGCCTGCCAAGAT
GCTAGTCATGGCTCACGCCGCTGCCCCGCAGAGCAAGCTCAAGGCCATCTACAAGAAGTA
CTCTTGTGAGCAGTATGGGCGTGTGTCCCTGCACGCCCCAGCAGTTGCCCCTCCCCAAAA
CCTCGCCTAGGCTGCTTTAGGATTTGTTGCTCGGCTTTCGATCTTGAAAGCTTCGTTACT
TACTGTTACTGTCTGATACACCAGGGTGTAAACAACAACTATATTCTTCATATCTTTTAG
TGATTTGCTTGGCTTTCGAATCAAGAGAGCTGCGTTACTGTACTTACGATACACCAGAGT
GTAACAACAACAGTTCATATTTGTGTGAATCGAATTCAGAGCTGTCTTTGTTTTAGTCTA
TTCTACCTCCATAGCATCAGGAGTGCCTCCATAGCAGACAGTAACACTATTTCAGATTGT
CAGAAAGTTGTTACCAGAAGATTTTTTTGTTGCATCTGAAAGTGTTTGCTCCTTANAAAA
AAAAAAAAAAAAA

Homology of Contig U35_16105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41390.1	450	7e-95	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi2g21330.1	434	5e-105
Arabidopsis v10	AT2G26760.1	387	2e-72	\| Symbols: CYCB1;4 \| Cyclin B1;4 \| chr2:11401551-11403205 FORWARD LENGTH=387