barSeed - Barley Seed Development Database

Probe CUST_16525_PI390587928

Source Contig U35_16106

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16525_PI390587928	Hv_44K_v2	TGTGTCGGCCACTCTTTCTCATGTAGCCTAGGATGCTTAATATTTAATTGATTTATTCAT	1717	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.325	1.517	1.140	0.913	0.251	0.291
Raw	177.195	323.007	209.105	273.103	25.490	32.007

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47183.1	988	2e-24	263 - 322	100	60 / 60	minus	ABC04961 ABC38491
MLOC	MLOC_7446.1	2218	2e-24	650 - 709	100	60 / 60	minus	ABC04961 ABC38491
MLOC	MLOC_7446.3	2119	2e-24	624 - 683	100	60 / 60	minus	ABC04961 ABC38491
JLOC1	JLOC1_30461.1	727	8e-25	30 - 89	100	60 / 60	minus
JLOC1	JLOC1_4909.1	1813	8e-25	1333 - 1392	100	60 / 60	plus
Harvest35	U35_16106	1879	3e-25	1718 - 1777	100	60 / 60	plus

Contig Sequence (1879 bp)

>U35_16106 1879 Hv_44K_v2
GCCCTGCTGCTGCTACCAATCGTGGGGGGTACATGTTCAGGCGCGAGATGATGAACCGGG
CAATGCACGCCGCGGCGAGGGGCGGTGACCTGGAGATCCTCACGGAGCTCCTGCAGGGTT
GCTCCGATGCCGCTGCGTACCAGGACGCGCAGGGCGCCACCATCTTGCATGCCGCGGCTG
CAAGGGGCCAAGTCGAGGTTGTGAAGTATCTGATTGTCGCTTTTGACATCGTCAACTCTG
TAGATGAGCAAGGGAATACAGCGTTGCATATAGCAGCATTCCGAGGTCATTTACCGGTGG
TGGAAGCCCTGATGACTGCATCACCATCACTTATATCAGCTAGAAATGAAGTTGGTGACA
CGTTCCTCCATATGGCACTGACTGGCTTCAGAACTCTTGGCTTCCGAAGGCTTGATCGTC
AGATGCAGCTCACGAAGCATCTGGTCTCTGGATCAATCATGGATGTCAGCGATGTAATCA
ACGTGCAGAACGACGATGGAAGAACCGTGCTTCACCTAGCAGTGGTTGGTAATCTGCACT
CCAGCCTCGTTGAGCTCCTGATGACCATGCCATCGATTGACCTGAACGTCCGTGACAGCA
ACGGCATGACCCCGCTGGATTTACTGAAGAAGCAGCCGCACACTGCATCGTCTGAGATAC
TCATCAAGGAGCTGATTCTGGCCGGCGGGATCTCGAACTCGAGGGATCACGAGAAGAGGT
CCGCCATTGCTTCTCAACTGAAGATGCACCACATTGTGGGCAGCCCGGGGACTTCTTTCA
GAATCTCATATGTTGAGATTTTCCTCCATGCGGGCATTGATGCGTCAGGCGTCAGTGAAA
GAACGAGAACGAGAACGACCTCGTTCTCTAGCGTTGGCAAGAGTGCTGAACTTGTAACCC
TGGGACCTGGTATTAAGAGGCTGAATTCCATGCAGAGCGCGGCTAGACACCTCAAGGTCC
TGCTCAGCTGACCGCTTCGCAAGGGGAATAAATCAGCTGGTAGCCCCAGGGAATCGGACG
ATGACGCCTCCTCGGTGGACTCCGTCAAGAGCTGGAGCCATGTCGAGACTACCCCGACAC
CGCTGAGGCAGAGGTACTCCAAGGTGAGCTCCCTATTCGGCAACAAGCGAACCTTGGCAA
GTCCATCAATGAAGATGAGGTCGGCAGCTGACCACACACTGCCCGAATCTCCCCCGGTTT
CGGCGTCATGGTCTTCGTCGTCGTTGATCGACAAGATCGAAGCAGTCCATCTAGACAAAG
ACGAACCATCACCCAGCGCCAGTGCAATGATCAGGCACACACCTAAGAAATATGGATCTC
TGAACAGTAGACTTATGAACCAGTACCTTGGCACCGGAGCGCAGTTGGGGGATTCAACCT
CGGGGCAGCGGTCGAGACGATCACTTCTGTCAGTAGTCTGATCAGATGAGTTAGATGGTG
CAGTTTAAATTTGACTGATAAGGCTGAGATAACTAAATATGTCTACAAAAATTACTAATG
CAATGTGGGCAGGTAAGTGTAACTGAGAGCATGATTTGGAAATGGATGGATTATAAAGTT
CCTAAAGTTAATTACCATATGTGCAAATCATGACCTCTGCCTTACATAATGTGTAAGTAC
ATGAAATGACAGATGTGTCAATCATTCAAAAAATGTGCCTGCTGTTATTCTTTTCATTTT
ATTTCAGAAGATGTGTACTTGTTCTTGGGTATAAAGCTGTGTCGGCCACTCTTTCTCATG
TAGCCTAGGATGCTTAATATTTAATTGATTTATTCATAGAATGTAAAAAATATATAGTTG
TAATGAAAAGGATCGTATGCGTTGCCTTTTTTGAAATAAAATGTAATGGTAATTATTTTC
TGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g23320.2	671	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g30410.1	655	0.0
Arabidopsis v10	AT3G01750.1	664	7e-76	Ankyrin repeat family protein \| chr3:270615-272691 FORWARD LENGTH=664