barSeed - Barley Seed Development Database

Probe CUST_16523_PI390587928

Source Contig U35_16107

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16523_PI390587928	Hv_44K_v2	TATGCTAGAAATGAAGTTGGTGACACGTTCCTCCATATGGCACTGACTGGCTTCAGAACT	214	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375093	3219	7e-23	1024 - 1080	100	57 / 57	plus	ABC06769 ABC06770
MLOC	AK371869	2786	7e-23	1562 - 1618	100	57 / 57	plus	ABC04961
MLOC	AK249068.1	2965	3e-21	1714 - 1770	98	56 / 57	plus	ABC04958 ABC04961
MLOC	MLOC_51236.4	1480	3e-21	1093 - 1149	98	56 / 57	plus	None
MLOC	MLOC_51236.5	720	3e-21	325 - 381	98	56 / 57	plus	None
MLOC	MLOC_51236.2	1390	3e-21	1002 - 1058	98	56 / 57	plus	None
MLOC	MLOC_51236.3	1701	3e-21	1304 - 1360	98	56 / 57	plus	None
MLOC	MLOC_9632.6	991	3e-21	278 - 334	98	56 / 57	plus	None
MLOC	MLOC_9632.4	1286	3e-21	571 - 627	98	56 / 57	plus	ABC04958
MLOC	MLOC_9632.1	1393	3e-21	680 - 736	98	56 / 57	plus	ABC04958
MLOC	MLOC_7446.1	2218	3e-21	1891 - 1947	98	56 / 57	minus	ABC04961 ABC38491
MLOC	MLOC_7446.2	1593	3e-21	1265 - 1321	98	56 / 57	minus	ABC04961
MLOC	MLOC_7446.3	2119	3e-21	1791 - 1847	98	56 / 57	minus	ABC04961 ABC38491
JLOC1	JLOC1_32715.4	1657	2e-21	1260 - 1316	98	56 / 57	plus
JLOC1	JLOC1_32715.3	1845	2e-21	1448 - 1504	98	56 / 57	plus
JLOC1	JLOC1_32715.2	1520	2e-21	1123 - 1179	98	56 / 57	plus
JLOC1	JLOC1_32715.1	2132	2e-21	1735 - 1791	98	56 / 57	plus
JLOC1	JLOC1_4909.2	1391	2e-21	273 - 329	98	56 / 57	plus
JLOC1	JLOC1_4909.1	1813	2e-21	273 - 329	98	56 / 57	plus
Harvest21	ABC38090	640	3e-25	215 - 274	100	60 / 60	plus
Harvest21	ABC27619	654	1e-23	489 - 545	100	57 / 57	plus
Harvest21	ABC04959	676	1e-23	339 - 395	100	57 / 57	plus
Harvest21	ABC04960	2518	6e-22	1165 - 1221	98	56 / 57	plus
Harvest35	U35_16107	640	3e-25	215 - 274	100	60 / 60	plus
Harvest35	U35_28640	654	1e-23	489 - 545	100	57 / 57	plus
Harvest35	U35_16106	1879	1e-23	339 - 395	100	57 / 57	plus
Harvest35	U35_16108	1487	6e-22	1302 - 1358	98	56 / 57	plus

Contig Sequence (640 bp)

>U35_16107 640 Hv_44K_v2
TTTGGTGGAACCGAACAAAGCCTAAAACATATGGTGTCTCACCATGGGAGTTATCATTCT
TTTGCTGCAACATCAGGTTGTTAAGTATCTGATTGTCGCTTTCGACATCGTCAACTCTGT
ACACGAGCAAGGGAATACAGCGTTGCATATAGCAGTGCTCCGAGGTCATTTACCGGTGGT
GGAAGCCCTGATGACTGCATCACCATCACTTATATATGCTAGAAATGAAGTTGGTGACAC
GTTCCTCCATATGGCACTGACTGGCTTCAGAACTCTTGGCTTCCGAAGGCTTGATCGTCA
GGCTCACGAAGCATCTGGTCTCTGGATCGATCATGGATGTCAGCGATGTAATCAACGTGC
AGAACGACGATGGAAGAACCGTGCTTCACCTGGCAGTGGTTGGTAATCTGCACTCCAGCC
TCGTTGAGCTCCTGATGACCGTGCCATCGATCGACCTGAACGTCCGTGACAGCAACGACA
TGACCCCGCTGGATTTACTGAAGAAGCAGCCGCACACTGCATCGTCTGAGATACTCATCA
AGGAGCTGATTCTGGCCAGCGGGATCTCGAACTCGAGGTATCACGAGACGAGGTCCCGCA
TTGCTTCTCAACTGAAGATGCACCACATTGTGGGCAGCCC

Homology of Contig U35_16107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g23320.2	671	9e-74	protein\|expressed protein
Brachypodium v1_2	Bradi2g30410.1	655	4e-74
Arabidopsis v10	None