barSeed - Barley Seed Development Database

Probe CUST_16521_PI390587928

Source Contig U35_16108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16521_PI390587928	Hv_44K_v2	TACTAACACATTCTTACTGCAGGTTGTGAAGTATCAGATTGTTGCTTTCGACATCGTCAA	1138	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249068.1	2965	2e-24	1551 - 1610	100	60 / 60	plus	ABC04958 ABC04961
MLOC	MLOC_7446.1	2218	2e-24	2051 - 2110	100	60 / 60	minus	ABC04961 ABC38491
MLOC	MLOC_7446.2	1593	2e-24	1425 - 1484	100	60 / 60	minus	ABC04961
MLOC	MLOC_7446.3	2119	2e-24	1951 - 2010	100	60 / 60	minus	ABC04961 ABC38491
JLOC1	JLOC1_4909.2	1391	8e-25	110 - 169	100	60 / 60	plus
JLOC1	JLOC1_4909.1	1813	8e-25	110 - 169	100	60 / 60	plus
Harvest21	ABC04960	2518	3e-25	1002 - 1061	100	60 / 60	plus
Harvest35	U35_16108	1487	3e-25	1139 - 1198	100	60 / 60	plus

Contig Sequence (1487 bp)

>U35_16108 1487 Hv_44K_v2
GGAGGCATCGCGGTGGAGGACGATAAGGCGACCGACGTGCTCGCTTGGGCCGAGGCATCG
GGGCGGAGGACGACATGGTGGTCGGCTTGCTCGCTTCCGAGGATGGAGGCCGCCTCGCCG
GGGCTCGGGTGGGGCATCACGGTGCCGGGCTATTGCCGGTGGTGCCGGGGCCGGGTGGTG
GTTTGACGGGCGACGCAGAGGAGGTGCTGTCCTGGATCCAACAACCAGCGCAGGGGTGGC
CCGGCGGGAGCTGCAGCTCGTCGGCATCGCGGCCATGCTCATCGCCTGCAAGTATGAGGA
GATATGGGCGCCCGAGGTAGGCGATTTCATATCCATCGCCGATAACTACTACTCGAGGCA
GCAGATCCTGTCCATGGAGAAGAATATCCTGAACAGCATGGCATGGAACCTCACGGTGCC
CACCCCGTACGTCCCTGGTGCGGTTCGCCAAGGCCGCCGGGGGCGACAAGGAGCTTCCAA
ACATGATATTCTTCTTCGCCGAGATGGCGCTCATGGAATATGAGCTGGTCACCGTGTGCC
CCTCGCTGCTGGCAGCGTCTGCCGTGTACGCTGCTCGGTGCACGCTGAAAAGAAGCCCTA
TCTGGACAGAAACCCTTAAGCATCACACCGGACTCGCTGAACCACAGCTCCTATGAGTGA
TCCATTTACTTGTCTCTCTGTTGTATAAGAGGCCTCAAATTAAAATTCATGATATAGAAT
ATATATAGATACGTAATTTTTAACTATTGAATTAAGGGGGAGTTCAACAGCATTAATCGA
CTCGAAGTGGCGATGAGCAGGGCTAAATCCATTTAACTCTGAGATTAGTTGCTAACAAGT
TTTTAGAAGTACTATTATAGTTATAGTCCGTGCCGGTATCTAACCGTGGGAATTATCATT
CTAAGGCCTTGTTCGGTTAATCCACTGTCCAAGTGGATTGAGGTGGATTGGAGGGGAATG
GGTGGAATTTGTACTAGATGGGATTTAATCCATGCCAATCCCTCTTATTTTCGGTGGAAC
CGAACAAAGCCTAAAACATATGGTGTCTCACCGTGAGAGTTATCATTCTTTTGCTGCAAC
ATCACGTTCATTTGTCATTGAACCTATTAATGGACTTTTTAGCAACTGCTGGGCACAGTA
CTAACACATTCTTACTGCAGGTTGTGAAGTATCAGATTGTTGCTTTCGACATCGTCAACT
ATGTACACGAGCAAGGGAATACAGCGTTGCATATAGCAGCGTTCCGAGGTCATTTACCGG
TGGTGGAAGCCCTAATGACTACATCACCATCACTTATATCAGCTAGAAATGAAGTTGGTG
ACACGTTCCTCCATATGGCATTGACTGGCTTCAGAACTCTTGGCTTCCGGAGGCTTAATC
GTGAGATGGAGCTCACGAAGCATCTGGTCTCTGGATCGATCATGGATGTCAACGATGTAA
TCAACGTGCAGAACGACGATGGAAGAACCGTGCTTCACCTAGCAGTG

Homology of Contig U35_16108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41390.1	450	8e-52	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi2g21330.1	434	1e-54
Arabidopsis v10	None