barSeed - Barley Seed Development Database

Probe CUST_16518_PI390587928

Source Contig U35_264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16518_PI390587928	Hv_44K_v2	GAACCTTGTTATGGAAGATATTATCTATTTTGGAATGGTACTGATATGAATGGCCTGTTG	841	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66332.1	1026	2e-24	838 - 897	100	60 / 60	plus	ABC01489 ABC37497
JLOC1	JLOC1_43692.1	1232	8e-25	949 - 1008	100	60 / 60	plus
Harvest21	ABC51418	376	3e-25	313 - 372	100	60 / 60	plus
Harvest21	ABC01489	1051	3e-25	836 - 895	100	60 / 60	plus	ABC01489
Harvest35	U35_49601	376	3e-25	313 - 372	100	60 / 60	plus
Harvest35	U35_264	1055	3e-25	842 - 901	100	60 / 60	plus

Contig Sequence (1055 bp)

>U35_264 1055 Hv_44K_v2
ACCCTAATCGCAGCTCCTCCGTCCCCTCCCGCCCCCGCCGCCGCCGCCGCAGCAGCCGCC
TGCCTCGAGCCGCCGTCGCCATGGGGAGAAGACCTGCAAGGTGCTATCGGCAGATCAAGA
ACAAGCCATACCCCAAGTCAAGGTACTGCCGTGGTGTGCCTGACCCTAAGATCAGGATCT
ATGATGTTGGCATGAAGAAGAAGGGCGTGGATGAGTTCTCCCACTGTGTTCACCTTGTCT
CATGGGAGAAGGAGAATGTGTCCAGTGAGGCACTTGAGGCTGCCCGTATTGCTTGCAACA
AGTACATGACCAAGCATGCAGGAAAGGATGCCTTCCACCTCAGGGTCAGGGTTCACCCGT
TCCATGTGCTCCGTATCAACAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTG
GTATGAGGGGTGCTTTCGGGAAGCCGCAGGGAGTCTGTGCCCGTGTTGCCATTGGCCAGG
TCCTCCTTTCTGTGCGGTGCAAGCCCAACAATGCCATCCATGCAACTGAGGCTCTTCGTC
GTGCCAAGTTCAAGTTCCCTGGTCGCCAAAAGATCATTGAGAGCAGGAAGTGGGGTTTCA
CCAAGTTCAACCGCAATGACTACCTCAAGTTCAAGAGTGAGGGCAGGGTCTTGCCTGATG
GAGTCAATGCTAAGCTGCTCGGATGCCATGGCCGCCTTGCGAACCGTGCCCCTGGACAAG
CTTTCCTGTCTGCCGCATAATCTAGCAGAAGACTATCAGTTCTATCAATCCTTATTTTAC
CGTCTGCAACTTAGATTCCAAGCGCCTGTGGTGCTATGTTATTTTGTCTGAATGTTGTGT
CGAACCTTGTTATGGAAGATATTATCTATTTTGGAATGGTACTGATATGAATGGCCTGTT
GAATCGTTTAAAAAAAAAAAAAAAAAGTTGGTGTTCTGCTTATTATTATTTGTGCTGTGG
ATGGTTGATATTATGTTTCTGTGTAAAGAAAATGTTATTCATTCAAAAAAAAAAAAGAAG
ATTCTTGCCTTCCCAGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g07700.1	220	4e-148	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi2g34440.3	220	4e-153
Arabidopsis v10	AT1G26910.1	221	2e-134	\| Symbols: RPL10B \| Ribosomal protein L16p/L10e family protein \| chr1:9321709-9322813 FORWARD LENGTH=221