barSeed - Barley Seed Development Database

Probe CUST_16516_PI390587928

Source Contig U35_266

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16516_PI390587928	Hv_44K_v2	GGCCTCCTGTATGATCCGTATCGATTATATTGATGCAGATGATGTATTCTTTATTCAAAA	2020	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81970.3	1834	2e-23	1742 - 1799	100	58 / 58	plus	ABC01480
MLOC	MLOC_81970.1	2060	2e-23	1898 - 1955	100	58 / 58	plus	ABC01480 ABC01481
MLOC	MLOC_81970.2	3167	3e-22	3112 - 3167	100	56 / 56	plus	ABC01480 ABC01481
JLOC1	JLOC1_54522.1	2087	1e-23	1898 - 1955	100	58 / 58	plus
Harvest21	ABC01480	636	3e-25	44 - 103	100	60 / 60	minus	ABC01480
Harvest21	ABC01484	2112	4e-24	2021 - 2078	100	58 / 58	plus
Harvest35	U35_266	2158	3e-25	2021 - 2080	100	60 / 60	plus

Contig Sequence (2158 bp)

>U35_266 2158 Hv_44K_v2
CGCCCGAGATGGCGACGATGGGGAGCCTGATCGGGCTGGTGAACCGGATCCAGCAGGCGT
GCACCGTGCTCGGCGACCACGGCGGCTGGCGCCGGGGGGTCGCTCTGGGAGGCGCTGCCC
TCCGTCGCCGTCGTCGGAGGCCAGAGTTCTGGGAAGTCGTCGGTGCTCGAGAGCATTGTC
GGGAGGGACTTCCTGCCCCGTGGATCTGGGATCGTGACGAGGAGGCCTCTGGTGCTGCAG
CTGCACAAGACGGAGGGCGGCCAGGAGTACGCCGAGTTCCTCCACGCCCCGCGGAAGCGC
TTCTCCGACTTCGCTGCTGTTAGGAAAGAGATTGCTGATGAAACTGATCGCATGACTGGA
AAAACGAAAGCAATATCAAATGTTCCTATCCATTTGAGTATATATTCTCCACATGTTGTT
AACTTGACACTTATTGATCTTCCTGGACTGACGAAGGTTGCTGTAGAGGGGCAGCCTGAG
TCTATTGTGCAAGATATTGAAAACATGGTCCGGTCTTACGTCGACAAGCCAAACTCTATC
ATATTGGCCATCTCTCCAGCAAACCAAGATATAGCAACATCAGATGCTATCAAGCTTGCT
AAGGACGTGGATCCTACAGGTGAAAGGACCTTTGGAGTTGTAACAAAACTTGATTTGATG
GACAAGGGTACCAATGCTATTGATGTACTCGAGGGGAGGTCTTATCGCTTGCAGCACCCC
TGGGTGGGCATTGTCAACCGTTCACAGGCTGATATCAACAAAAATGTTGACATGCTCGCA
GCACGTCGCAAAGAACAAGAGTACTTCCAAAGTAGTTCTGATTATGGTCACTTGGCACAT
AAAATGGGTGCAGAGTATCTTGCTAAGCTTCTGTCACAGCATTTAGAGGCTGTGATCAAA
GCCAAAATTCCAAGTATTATATCAATGATCAACAAGACAGTTGATGAAATTGAAGCTGAG
TTGGATCGACTTGGTAGGCCAATTGGAGGTGATGCTGGGGCACAACTGTATACGATATTG
GACATGTGTCGTGCATTTGACCGAGTTTTTAAAGAGCACTTAGATGGCGGTCGACCAGGT
GGAGATCGCATTTATGGTGTCTTTGACCACCAGTTACCTGCAGCATTGAAAAAGCTTCCC
TTCGATAAACATCTTTCATTGCAAAATGTTCGGAAAGTCATTTCTGAGGCTGATGGTTAC
CAGCCCCATTTGATTGCCCCTGAGCAAGGTTACAGAAGACTTATAGATAGTTCACTCAGC
TACTTTAGGGGTCCGGCTGAAGCTTCAGTTGATGCGGTCCATTTGGTATTGAAGGAGCTA
GTCCGAAGGTCGATTGCAGCAACAGAGGAATTGAAGCGTTTCCCAACGCTTCAATCAGAT
ATAGCTGCAGCAGCAAATGAAAGCCTAGAAAGATTCCGTGAGGATGGCCGCAAGACGGTT
ATTCGTCTAGTTGACATGGAGGCCAGTTACCTAACAGTAGAGTTCTTCAGGAAACTTCCT
ACTGAACCAGACAAAGGAGCTAACAATAACACTCCGGCCAACGACAGATATCAGGATAAC
CATCTTCGAAGAATCGGATCGAATGTATCATCTTACATCAACATGGTTTGCGATACATTG
AGGAACACGATTCCGAAAGCAGTCGTGCACTGCCAAGTGAAGGAGGCAAAAAGAAACCTG
CTCAACCGTTTCTATGCGCATGTAGGAAGCAAAGAGAAGAAGCAGCTGAGCGCGATGCTG
GACGAGGACCCCGCGTTGATGGAGAAGAGGGATTCCCTCGTGAAGAAGCTGGAGCTGTAC
AAGTCCGCAAGGAACGAGATCGACTCGGTTGCATGGAAATGATCTGATCTGATCTGATGG
ACTGTTCGTGGCTGGAACAGATAGAACGTTTGTAGTAGCGACGCTCCATTCGTTTTGCAT
ATGCTTTGTACACGGTCTTTGTTGCCGAGTGTTGTTTTGTGGCTACCGCCTAGACGAGAC
ATGGACAGACGCAGTTGCTTCCTTGGGCCAACCATCCTTTGGCCTCCTGTATGATCCGTA
TCGATTATATTGATGCAGATGATGTATTCTTTATTCAAAAAAAAAAAAAAAAATGTTTTG
TCATGGCCCTCTAATGTGACGTGCCCTCTGAATCTCTANNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g50520.1	612	protein\|dynamin family protein, putative, expressed
Brachypodium v1_2	Bradi1g11500.1	613
Arabidopsis v10	AT1G14830.1	614	\| Symbols: ADL1C, ADL5, DRP1C, DL1C \| DYNAMIN-like 1C \| chr1:5107699-5111470 REVERSE LENGTH=614