barSeed - Barley Seed Development Database

Probe CUST_16513_PI390587928

Source Contig U35_269

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16513_PI390587928	Hv_44K_v2	ATTGCTATGAATCCTCAATGTCATCTTCATGGCTTTGTGAGATGGACAGAGACCAATAAA	341	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9458.1	1883	2e-24	114 - 173	100	60 / 60	minus	ABC01924
MLOC	MLOC_9458.2	1633	2e-24	19 - 78	100	60 / 60	minus	ABC01924
JLOC1	JLOC1_6158.1	848	8e-25	90 - 149	100	60 / 60	minus
JLOC1	JLOC1_6157.1	482	8e-25	334 - 393	100	60 / 60	plus
Harvest21	ABC01924	640	3e-25	342 - 401	100	60 / 60	plus	ABC01924
Harvest35	U35_269	989	3e-25	342 - 401	100	60 / 60	plus

Contig Sequence (989 bp)

>U35_269 989 Hv_44K_v2
TAGTGGATCCAAAGGGCGGGTTCGGCTCTCGTCGTTCGCGGCCGGTGCGGCGACGGCGTC
AGCGGTGGGCTTCTTGCTCCTTTACAAAGACCACCTCCTGGCCCGCGCCGCCATCGCCCG
ACAGGTGGAGGATGTCAAGAGAATTTCTGAAAAGCACTATGAAACCCTGAGTCATCGGAT
CTCAGCATTCGAAAATAGAAAAGGATCAGGAACTAATAAAGAGGCATCAGATTAATTATG
CACGTTGGGTGTGTACAATGGTTAAACAATCTGCCAATGTAATTTGTGGTTGCTGCATGC
GTATTACTGCAGCATGTAAGCTGTACCATTTTGCTGTTCAAATTGCTATGAATCCTCAAT
GTCATCTTCATGGCTTTGTGAGATGGACAGAGACCAATAAAAAAAACAATTTTGTCGTTA
AAAAAAAACCCGTCCCTCCTCTCCTTCCCGGCGCCACCCAGACGCTCGAGTCCCCGACCA
ACCATGGCGGCAGCGGCCGGAGAAGCCCCGCGGGCGCTGTCCCAGAAGGAGCAGGACGTA
CAGATGATGCTCGCCGCCGACGTCCACCTCGGCACCAAGAACTGCGACTTCCAGATGGAG
CGCTACGCCTACAAGCGCCGCTCCGACGGCATCTACATCATCAACCTGGGCAAGACATGG
GAGAAGCTCCAGCTCGCTGCGAGGGTCATCGTCGCCATCGAGAACCCGCAGGACATCATC
GTCCAGTCCGCCCGCCCCTACGGCCAGCGCGCCGTCCTCAAGTTCGCGCAGCACACCGGC
GCCAACGCCATCGCCGGGAGGCACACCCCTGGTACCTTCACCAACCAGATGCAGACCTCC
TTCAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTATGTAGCAATGGTCTGTGTG
ATGTAATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGCGATGTAATAAAAAGGCAGC
CTCTTCCGCTCGAAAAAAAAAAAAAAAAG

Homology of Contig U35_269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08440.2	270	1e-68	protein\|ribosomal protein S2, putative, expressed
Brachypodium v1_2	Bradi1g72480.1	307	7e-72
Arabidopsis v10	AT1G72370.1	298	1e-62	\| Symbols: P40, AP40, RP40, RPSAA \| 40s ribosomal protein SA \| chr1:27243148-27244842 REVERSE LENGTH=298