barSeed - Barley Seed Development Database

Probe CUST_16500_PI390587928

Source Contig U35_16114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16500_PI390587928	Hv_44K_v2	CAAATTTTCTTCAGACATTTGGTGAGTGTTGTAATGATTGTGAAGCAAGTTCCCCATCAC	1010	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.052	1.739	1.140	0.838	0.316	0.367
Raw	1043.814	1396.870	791.252	913.637	122.295	153.093

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249362.1	2278	2e-24	2196 - 2255	100	60 / 60	plus	ABC05040 ABC05042
MLOC	MLOC_67077.5	948	2e-24	771 - 830	100	60 / 60	plus	ABC05040 ABC05042
JLOC1	JLOC1_44244.1	1848	8e-25	1683 - 1742	100	60 / 60	plus
Harvest21	ABC05040	1070	3e-25	1011 - 1070	100	60 / 60	plus	ABC05040
Harvest35	U35_16114	1070	3e-25	1011 - 1070	100	60 / 60	plus

Contig Sequence (1070 bp)

>U35_16114 1070 Hv_44K_v2
GAGGAACCTTGCTATGCTGGTGTGCCCATGTCTACAATCATTGAAAGGGGTTACGGAGTT
GGTGATGTTATTTCTCTTTTGTGGTTCAAGCGCAGCCTTCCTCGTTATTGTACTCAATTT
ATTGAGATATGCATCATGCTTTGTGCTGATCATGGTCCTTGTGTATCCGGTGCTCACAAT
TCTATAGTTACTGCTAGGGCTGGAAAGGACCTTGTTTCCAGCTTGGTATCCGGATTATTG
ACGATTGGCCCCCGATTTGGTGGTGCAATTGATGACGCCGCTCGGTACTTCAAAGATGCA
TATGATAGGGGTCTTACACCTTATGAATTTGTTGAGGGCATGAAAAAGAAGGGAATCCGT
GTCCCTGGGATTGGTCACAGGATCAAAAGCAGAGACAACAGGGACAAGAGAGTGCAGCTT
TTACAGAAATATGCTCACACACACTTCCCTTCAGTTAAGTACATGGAGTATGCTGTTCAG
GTTGAGACCTACACCCTGTCAAAGGCCAACAATTTGGTTATGAACGTTGACGGTGCAATT
GGCTCGCTTTTCTTGGATCTTCTTTCTGGGAGTGGAATGTTCAGCAAGCAAGAGATTGAC
GAGATTGTAGAGATTGGGTATCTTAATGGACTCTTTGTGCTTGCACGTTCAATTGGCCTA
ATTGGGCACACCTTTGATCAGAAGAGGCTCAAGCAACCACTCTACCGTCACCCTTGGGAG
GATGTCCTCTACACCAAGTGAGGCAGGCATCATATTGATCTTCCACTTGTGTGTACACCA
TAAAATCGAGCATAATTACATAGGATTCAAAGTTCTGGTTGTGAACTAGGCAACGAGAGA
GAGAAGACCGTTTGCAGATGAGCATTGGTTGTGTGTATGTCTTGTTGGACTGTTTTTTCT
TTATAAGTTCCAACGTAAGTCTTTTTGTTCAAGCATGAAAGCTTTACGGCATCAGATATT
TGAGAGGATACTTGATAATTGGTTCATGTTATCATCAATTCAGTGACCGTCAAATTTTCT
TCAGACATTTGGTGAGTGTTGTAATGATTGTGAAGCAAGTTCCCCATCAC

Homology of Contig U35_16114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g19450.2	553	4e-159	protein\|ATP-citrate synthase subunit 1, putative, expressed
Brachypodium v1_2	Bradi2g11480.2	514	3e-161
Arabidopsis v10	AT3G06650.1	608	3e-151	\| Symbols: ACLB-1 \| ATP-citrate lyase B-1 \| chr3:2079247-2082633 REVERSE LENGTH=608