barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16499_PI390587928Hv_44K_v2GACATTTGGGGAATATTGTAATGATTATGATGCTAGTTCCCCATCACAAAACTCTGAATT2126GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9311.7911.1870.9010.4470.486
Raw 1128.9281651.937952.2671114.397199.451232.030



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249710.125222e-242408 - 246710060 / 60plus ABC05040 ABC05042
MLOCMLOC_66461.215722e-241463 - 152210060 / 60plus ABC05040 ABC05042
JLOC1JLOC1_43794.118288e-251602 - 166110060 / 60plus
Harvest21ABC0504223553e-252227 - 228610060 / 60plusABC05042
Harvest35U35_1611522543e-252127 - 218610060 / 60plus



Contig Sequence (2254 bp)

>U35_16115 2254 Hv_44K_v2
CAAATCAATTCCCGTCCCGGAGCAGTCCCCGCCCCCACTTCGCGTTGCCTTGCATCGCAA
GGGGAAGTAAATCATGGCGACAGGTCAAATTTTCTCGAAAACTACCCAAGCGCTGTTCTA
TAATTATAAGCAACTTCCTATCCAGCGGATGCTTGATTTTGACTTCCTCTGTGGGAGAGA
AACACCTTCTGTTGCTGGAATCATCAATCCTGGTTCTGATGGGTTCCAGAAACTTTTTTT
TGGACAAGAAGAAATTGCTATTCCAGTTCATCCTACAATTGAAGCTGCTTGCAATGCACA
CCCAACTGCGGATGTGTTTATCAACTTTGCATCCTTCCGGAGTGCGGCTGCTTCTTCAAT
GTCAGCTTTGAAGCAGCCAACTATGCGAGTTGTAGCCATTATAGCAGAAGGAGTTCCTGA
ATCAGATGCAAAGCAGCTAATTAGTTATGCACGTGCTAACAACAAGGTCATCATTGGACC
TGCAACAGTCGGAGGAGTTCAGGCTGGTGCTTTCAAGATTGGTGATACTGCTGGAACCAT
TGACAACATAATTCAATGCAAGTTGTACAGGCCCGGATCAGTTGGTTTTGTGTCTAAATC
GGGTGGCATGTCAAATGAGCTGTACAACACCATTGCAAGAGTGACTGATGGTATTTATGA
AGGAATTGCAATTGGAGGAGATGTTTTCCCTGGCTCAACTCTTTCAGATCACATTCTGCG
TTTTAATAACATACCTCAGGTTAAAATGATGGTTGTTCTTGGGGAGCTTGGAGGAAGTGA
CGAGTATTCGCTCGTCGAGGCCTTGAAACAAGGAAAGGTTCAGAAACCTGTTGTTGCTTG
GGTTAGTGGGACATGTGCACGTCTATTCAAATCTGAGGTCCAGTTTGGCCATGCTGGTGC
GAAGAGCGGTGGTGAGTTGGAATCCGCACAAGCTAAGAATCAGGCACTGAGGGATGCTGG
GGCAGTTGTCCCTACTTCCTTTGAAGCTCTTGAAAGTGTGATTAAGGAGACATTCGAGAA
GCTGGTTGAGGAAGGAAATATTCCTCCTGTCCCTGAGGTTACACCTCCCCCCATACCTGA
GGATCTTAACACTGCCATCAAAAGTGGGAAGGTCCGGGCTCCCACTCACATTATCTCCAC
TATCTCTGATGATAGAGGTGAGGAACCTTGCTATGCTGGTGTGCCCATGTCTACAATTAT
TGAAAGGGGTTATGGAGTTGGTGATGTTATTTCTCTTTTGTGGTTCAAGCGCAGCCTTCC
TCGTTATTGTACCCAATTTATTGAGATATGCGTCATGCTTTGTGCTGATCATGGTCCTTG
TGTATCCGGTGCTCACAATTCTATAGTTACTGCTAGGGCAGGAAAGGACCTTGTTTCCAG
CTTGGTATCTGGATTGTTGACAATTGGCCCCCGATTTGGTGGTGCAATTGATGACGCCGC
TCGGTACTTCAAAGATGCATATGATAGGGGTCTTACGCCTTATGAATTTGTTGAGGGCAT
GAAAAAGAAGGGAATTCGTGTCCCTGGGATTGGTCACAGGATCAAAAGCAGAGACAACAG
GGACAAGCGAGTGCAGCTTTTACAGAAATATGCTCACGCACACTTCCCTTCAGTCAAGTA
CATGGAGTACGCTGTTCAGGTTGAGACCTACACCCTGTCAAAGGCCAACAATTTGGTTAT
GAATGTTGACGGTGCCATCGGCTCGCTTTTCTTGGATCTTCTTTCTGGGAGTGGAATGTT
CAGCAAGCAAGAGATTGACGAGATTGTAGAGATCGGGTATCTTAATGGACTCTTTGTGCT
TGCACGTTCAATTGGCCTAATTGGGCACACCTTTGACCAGAAGAGGCTCAAGCAACCACT
CTATCGTCACCCTTGGGAGGATGTCCTCTACACCAAATGAGGCACCATATAGTGTATTCC
ACCTGTGTGTACACCATAAAAATAAAATCGAGCATAACTGCATAGAATTCAAGATGGAAC
TACGCAAGGAGGGATAGAGAACCATTACAGATGGAAGTTTGTTTCATTTTTTTCATTCAA
CCATGAAAGCATTAGGGCATCAGATATTTGAAAGGATACTTGATAGTTGTTTCATCTTAT
CATAGTTGGCTGTTAAATTTAGTTCAGACATTTGGGGAATATTGTAATGATTATGATGCT
AGTTCCCCATCACAAAACTCTGAATTATCTATTGTCAATTTTATGGTAATAAAATATACA
TGTGTTGCTGCTGGATAAAAAAAAAAAAAAAAAA



Homology of Contig U35_16115 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g19450.16090.0protein|ATP-citrate synthase subunit 1, putative, expressed
Brachypodium v1_2Bradi2g11480.16090.0
Arabidopsis v10AT5G49460.16080.0| Symbols: ACLB-2 | ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608