barSeed - Barley Seed Development Database

Probe CUST_16492_PI390587928

Source Contig U35_272

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16492_PI390587928	Hv_44K_v2	CAGCTTTTATAATTCTTTCATGTTATGCTGGTGGTTCTTTTGTAGCTGGATAAGGATTTG	1330	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.890	1.121	1.352	1.241	0.748	0.641
Raw	47631.400	92541.000	98057.900	132260.033	30262.933	28194.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6065.1	1474	2e-24	4 - 63	100	60 / 60	minus	ABC01633 ABC01634 ABC01642 ABC31694
JLOC1	JLOC1_3933.1	1637	8e-25	1415 - 1474	100	60 / 60	plus
Harvest21	ABC50225	475	3e-25	127 - 186	100	60 / 60	minus
Harvest21	ABC31694	383	3e-25	95 - 154	100	60 / 60	minus	ABC31694
Harvest21	ABC01642	1484	3e-25	1331 - 1390	100	60 / 60	plus	ABC01642
Harvest35	U35_272	1514	3e-25	1331 - 1390	100	60 / 60	plus

Contig Sequence (1514 bp)

>U35_272 1514 Hv_44K_v2
GGTCTTCTTCATCGTGGAGCGCTATATAACCCCCTAATTTTCCAAGCCCAAACCCACACC
TCTCTCTACTCCCCCACCCCTATCACCGCCTGCTGGAACAGCTAGATCCAGGGCTCGAGA
TCGAGATCCCCGGCCAGGAAGCAATGGCAGGGACGGTGACTGTGCCCGGATCGTCGGTGC
CATCGACGCCGCTGCTCAAGGACGAGCTGGACATCGTGATCCCGACGATCCGCAACCTCG
ACTTCCTCGAGATGTGGCGCCCCTTCTTCCAGCCGTACCACCTCATCATCGTCCAGGACG
GCGACCCCAGTAAGGCCATCAAGGTTCCCGAGGGCTTCGACTACGACCTTTACAACCGCA
ACGACATCAACCGCATTCTCGGCCCAAAGGCCTCATGCATCTCCTTCAAGGACTCCGCGT
GCCGCTGCTTCGGCTACATGGTCTCCAAAAAGAAGTACGTCTTCACCATCGACGACGACT
GCTTCGTGGCCAAGGACCCATCTGGCAAAGACATCAATGCTCTTGAGCAGCACATCAAGA
ACCTCCTCAGCCCGTCAACCCCGTTTTTCTTCAATACCTTGTATGACCCCTACCGTGAAG
GCGCGGACTTTGTTCGTGGATACCCCTTCAGCCTTAGGGAGGGTGCACCCACTGCTGTCT
CTCATGGCCTTTGGCTGAACATCCCTGACTATGATGCACCCACACAGATGGTCAAACCTC
GTGAGAGGAACAGCAGGTATGTTGATGCCGTCCTGACTATTCCCAAGGGAACATTGTTCC
CCATGTGTGGCATGAACCTTGCTTTTGACCGTCAGCTCATCGGCCCTGCAATGTACTTTG
GCCTCATGGGTGATGGCCAGCCTATTGGTCGCTACGATGACATGTGGGCTGGATGGTGCG
TCAAGGTCATCTGCGACCACTTGAGCCTTGGAGTGAAGACTGGCCTGCCATACCTGTGGC
ACAGCAAGGCTAGCAACCCATTTGTCAACTTGAAGAAGGAGTACAAGGGCATCTTCTGGC
AGGAGGACATCATTCCCTTTTTCCAGAACGCCACCCTTTCCAAGGAGTGTGACACAGTCC
AGAAGTGCTACATCTCACTCTCGGAGCAGGTAAGGGAGAAGCTTGGCAAGATTGACCCTT
ACTTCCTGAAGCTTGCTGATGCCATGGTCACCTGGATCGAGGCCTGGGACGAGCTGAACC
CATCTGCTACTCCTGATGCCGTTGCTGCTGCTGGGAACGGCAAGGCAGCAGCCAAGTAGC
TAGCTTGGGAAGTCAAGAGTGTATGGTTACGGCCTGGATATAGCTCTTTTCGAGGAAGAG
ATTACTGAAGCAGCTTTTATAATTCTTTCATGTTATGCTGGTGGTTCTTTTGTAGCTGGA
TAAGGATTTGTTATCATTTACATAATTCAAGACAATAATATTTATCATGTAATTTTGAGA
AATCAAGCACCGTTTGTTGTTAAAAAAAAAAAAAAAAAATCTTTGTAGTTGAGCATCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_272 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g40270.1	365	protein\|alpha-1,4-glucan-protein synthase, putative, expressed
Brachypodium v1_2	Bradi1g15050.1	370
Arabidopsis v10	AT5G15650.1	360	\| Symbols: RGP2, ATRGP2 \| reversibly glycosylated polypeptide 2 \| chr5:5092203-5094093 FORWARD LENGTH=360