barSeed - Barley Seed Development Database

Probe CUST_1647_PI390587928

Source Contig U35_38003

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1647_PI390587928	Hv_44K_v2	TAACAACTGAGATTAAAAGATCACCGGATGAGAAGCTAGACAGATTGGAATCTCTTAAAT	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51725.8	1401	2e-24	363 - 422	100	60 / 60	plus	ABC21820
MLOC	MLOC_51725.4	2008	2e-24	990 - 1049	100	60 / 60	plus	ABC21820
MLOC	MLOC_51725.2	2869	2e-24	1800 - 1859	100	60 / 60	plus	ABC21820
MLOC	MLOC_51725.1	2230	2e-24	1161 - 1220	100	60 / 60	plus	ABC21820
MLOC	MLOC_51725.7	1906	9e-22	866 - 927	97	60 / 62	plus	ABC21820
JLOC1	JLOC1_33065.2	1959	8e-25	922 - 981	100	60 / 60	plus
JLOC1	JLOC1_33065.1	2151	8e-25	1114 - 1173	100	60 / 60	plus
Harvest21	ABC33779	567	3e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_38003	567	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_38003 567 Hv_44K_v2
GATACGTTGGAAGAGTGTGGTTGTATTCTGTGGGATCTTGCGGCTAGTAAACCTAAGCAA
AACTTATGATTAATAACCTTGTGATTGAAGTGCTTTTGGAAAACCTTCATACGGCAAATT
CTTCTAGGGTGAAGGAAATTTGTCTTGGAATCATGGGAAACTTATTGTGTCATGAATCTC
TAGTACCTGCAATCTCTTTGAAAGAAGGTTTAATTGGAACTGTTGTGGAGCAACTGTTTC
TAGATGATAGCAATTGCCTTTCTGAAACATTCAGGTTGTTGGCTGCCGTTCTTCGGTCCA
GAGCATTTGTTTCTTGGGCTCAAGCTCTTTTACCTGATGAGATTCTTTCACGTATTCTGG
GGATAGTTGGGAACACAAACAACTCTACATTACTTGAAATGATCATTGATTTCATGTCAA
CTGTCATTGATAATCGAGATGTGATTGCTATGCTTATCCAGCCCTTGCTTAAACTGGGTT
TAGTTGACCGTGTTATTGGGTTACTAACAACTGAGATTAAAAGATCACCGGATGAGAAGC
TAGACAGATTGGAATCTCTTAAATCGA

Homology of Contig U35_38003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47980.1	621	3e-52	protein\|expressed protein
Brachypodium v1_2	Bradi1g12320.1	594	6e-61
Arabidopsis v10	None