barSeed - Barley Seed Development Database

Probe CUST_16473_PI390587928

Source Contig U35_30416

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16473_PI390587928	Hv_44K_v2	TGCCCTATTGAACTTGGAACAATTTATGTACTACTGCCACGCACTGTTTCTGTTAAAAAA	361	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.412	3.696	1.423	0.624	0.228	0.271
Raw	85.000	202.794	65.608	47.951	5.290	7.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74254.1	560	3e-22	376 - 431	100	56 / 56	plus	ABC30328
MLOC	MLOC_74253.4	1918	3e-22	255 - 310	100	56 / 56	minus	ABC30328 ABC45108
MLOC	MLOC_74253.5	1915	3e-22	255 - 310	100	56 / 56	minus	ABC30328 ABC45108
MLOC	MLOC_74253.2	5936	3e-22	4184 - 4239	100	56 / 56	minus	ABC01774 ABC05485 ABC08976 ABC30328 ABC45108
JLOC1	JLOC1_49476.1	2677	1e-22	1623 - 1678	100	56 / 56	plus
JLOC1	JLOC1_49475.2	5962	1e-22	4193 - 4248	100	56 / 56	minus
JLOC1	JLOC1_49475.1	4936	1e-22	3167 - 3222	100	56 / 56	minus
Harvest21	ABC30328	432	3e-25	362 - 421	100	60 / 60	plus	ABC30328
Harvest35	U35_30416	432	3e-25	362 - 421	100	60 / 60	plus

Contig Sequence (432 bp)

>U35_30416 432 Hv_44K_v2
AGCCGACCTAGCAGGCAACCAGGCGGCCGGCGGCGGGGGCGACCACCACGGCGGCCAGTG
GTGGTGCAGGTCTGTCCCTCCCCTCTAAAGCAGGTCTGGTAAGTCCTTTTTTCAACCCAT
ACCAAAGCAGCTAATCCCGTTGAAATACTTGATGCACTTAGCTTGATACCTGATTTGGCC
GAGGAAGACATGCTTCGATGTTATGGGAAGTTGGTACTCAATGATCGTCTGTTTCAAGCT
CTAAAGGAGCTGCCCGTCACCATGAGGAAGACATGGCTGCTAATGGTGCCTTGAAGCTTG
ATGCTTTTCTGATATGTGTGTGTTCTTGTATGTCTTATTGAACATCGAACTATCTATTTT
ATGCCCTATTGAACTTGGAACAATTTATGTACTACTGCCACGCACTGTTTCTGTTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_30416 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None