barSeed - Barley Seed Development Database

Probe CUST_16472_PI390587928

Source Contig U35_16123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16472_PI390587928	Hv_44K_v2	CGACAACAAGTGTTTGTTTATACGGAGTACATTGTAACTTGGAGAGCGTTATCTCTTTAC	1092	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.484	3.263	1.218	0.865	0.881	0.773
Raw	21.223	43.838	14.717	15.407	4.053	3.913

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74679.2	1652	2e-24	858 - 917	100	60 / 60	plus	ABC04437 ABC04438
Harvest21	ABC04438	926	3e-25	5 - 64	100	60 / 60	minus	ABC04438
Harvest21	ABC49418	680	1e-23	24 - 84	98	60 / 61	minus
Harvest35	U35_16123	1156	3e-25	1093 - 1152	100	60 / 60	plus
Harvest35	U35_47893	680	1e-23	24 - 84	98	60 / 61	minus

Contig Sequence (1156 bp)

>U35_16123 1156 Hv_44K_v2
CAGCTCCGCACCACTCCCCACCCCACGCTCCACGACGCGCGCGCGCGAGCGAGCCATGGC
CGCCCTCCGCCTCGCCTCCTCCGTCACGCTCTGCCCCGCGGCCGCGGCCGCGTCGCCCTC
GTCCGCCGCCGCGCCCCGCGCCGCCTCCTTCGCCTGCGCGGTCGCGCGCGGGCTCCCGTC
CCTCCGCCTGGCCGCGCCCCGCCGCCGCCGCGGCGACCTCGGCAGGCCCAGGGCCGCCGG
CGCCGAAGCCGCGGCCGAGAACTACGCGACCGCGCTCACGGAGGTGGCCGCCGAGAGCGA
CCTCCTCGACGCGACCGTCGCGGACATGGAGAAGCTGGAGAAGATCTTCGCCGAGGAGGC
CATCGCCGAGTTCTTCGACAACCCCACCGTGCCGCGCGAGGAGAAGACGGCGCTCATCGA
CGAGATCGCCAAGTCGTCCGAGCTGCAGCCGCACACCGTCAACTTCCTCAACGTCGTCAT
CGACAACACCCGCGCGGGCCTGATGCCGCAGATCGTGCGCGAGTTCGAGACCGCCTACAA
CGCGCTCACCGGCACCGAGGAGGCCGTCGTCACCTCCGTCGTGCAGCTCGAGTCGCAGGA
CCTCGCGCAGATCGCCACGCACGTGCAGAACATCACCGGCGCCGCCAACGTCCGGATCAA
GACCCGCCTCGACCCGGAGCTCATCGCCGGATTCACCGTGCAGTACGGCCGCGACAGCTC
CAACTTCATCGACATGAGCGTCCGCAAGCAGATCGCGGAGATCACCTCCGAGTTGGAGAT
GCCCTCCGTTAACCTCGAAGTCTGATGCTTAGGTCCTCTTTTTTCTGCCGTCTCTATACA
TCTTCTTCTGTATCATTATTATCCGGTGAAATGTTAAAATACATAACTTGGTTCCAGCAT
CTAAAAAAAAAAAAACTCCTTTTGAATTTCACAGGAGAAATTTCTGTACTGTGTGCTGTG
CACAAGAGGGAAACCAACCTGCAAATCAGATTGGAACTACTACAACCAAAGGGGAAACGG
AGACACAATTTTTTGTTAGATTGTTGTCAGTAGAGTCAAAAGGTCCATGTACACATATGC
ACTGCATAACCTCGACAACAAGTGTTTGTTTATACGGAGTACATTGTAACTTGGAGAGCG
TTATCTCTTTACAATT

Homology of Contig U35_16123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51470.2	244	6e-80	protein\|ATP synthase F1, delta subunit family protein, putative, expressed
Brachypodium v1_2	Bradi3g59130.1	248	5e-85
Arabidopsis v10	None