barSeed - Barley Seed Development Database

Probe CUST_16471_PI390587928

Source Contig U35_30417

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16471_PI390587928	Hv_44K_v2	GCCGTGCGCTCGGCGCGGACTCCAAGTCGGCACTCGACACCAACGGCCATGGCACCCACA	358	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365933	2664	2e-24	639 - 698	100	60 / 60	plus	ABC12029 ABC12030
MLOC	MLOC_58156.1	2817	2e-24	796 - 855	100	60 / 60	plus	ABC12029 ABC12030
JLOC1	JLOC1_37755.1	2823	8e-25	745 - 804	100	60 / 60	plus
Harvest21	ABC30329	418	3e-25	359 - 418	100	60 / 60	plus
Harvest35	U35_30417	418	3e-25	359 - 418	100	60 / 60	plus

Contig Sequence (418 bp)

>U35_30417 418 Hv_44K_v2
GCGCGGCTCACGGAGCGCCAGGCTGAGCTGCTCGCGTCGTCGAGCTCGGTGCTTGCGGTC
GTGCCCGACACGATGCAGGAGCTGCACACCACGCTGACGCCGTCCTTCCTCGGCCTCTCG
CCGTCCTCCGGGCTGCTCAAGGCGTCCAACGGCGCCACGGACGTCGTCATCGGGGTCATC
GACACCGGCGTGTACCCGGAAGGGCGCCCGTCCTTCGCGGCCGACCCGTCGCTGCCGCCC
CCGCCGAGCAAGTTCCGCGGCAGGTGCGTGTCCGGTCCGTCGTTCAACGGCTCTGCGCTC
TGCAACAACAAGCTCGTCGGCGCCAAGTTCTTCCAGCGGGGGCAGGAGGCTCTACGCGGC
CGTGCGCTCGGCGCGGACTCCAAGTCGGCACTCGACACCAACGGCCATGGCACCCACA

Homology of Contig U35_30417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None