barSeed - Barley Seed Development Database

Probe CUST_16470_PI390587928

Source Contig U35_5169

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16470_PI390587928	Hv_44K_v2	AATCCCCACATTGTGCATTTGTGAGTGGTCCTTGTGTCAAATTTATTCTTTATTTCTTGT	642	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353650	3396	2e-24	3266 - 3325	100	60 / 60	plus	ABC11901
MLOC	MLOC_56958.1	3650	2e-24	3511 - 3570	100	60 / 60	plus	ABC11901
MLOC	MLOC_56958.2	3578	2e-24	3439 - 3498	100	60 / 60	plus	ABC11901
JLOC1	JLOC1_36864.3	3578	8e-25	3460 - 3519	100	60 / 60	plus
JLOC1	JLOC1_36864.2	3560	8e-25	3442 - 3501	100	60 / 60	plus
JLOC1	JLOC1_36864.1	3632	8e-25	3514 - 3573	100	60 / 60	plus
Harvest21	ABC11901	719	3e-25	18 - 77	100	60 / 60	minus	ABC11901
Harvest35	U35_5169	719	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (719 bp)

>U35_5169 719 Hv_44K_v2
GAACGAGGACAAGAGATGCCGCCCCATTCTTTTTCATTCCAACGGACCAGAGACCGGAAA
TCAGGAACCATTCCCGAACGGGATATGCATCCACATGCCTCTGGATGGTGGGGCAGGATC
CAGCAAGGAGCCCCTAGGCTTTGAAGAGGACGACAATCCCAACGAGATCAAGACATCCGG
GGAGAAATCCATGGCGGGGAGTTTGTAGATTATATAACCAACGAGGCACGGAGTTGCCGC
CGCGGAGTCTAATTGTCTGTGACGAAAGGCGGTATCCACCCCCAAACTGTATAAAAAGTG
AGGAAGATTGGTTCAGTAGTGCAGGAATTATGGCGTGGCGTGGCATGGCGCATCTACCGG
TTTTTGTCGCAGCGGATGTCGCCCCCCTGAAGCAGCGGCTTTGAATCGCAGTCGGGAGTT
TGCTAGGTCCCACCCCCCCTCTTTTGACCCCCCAACTCTGTACAGATAGATGTGGGGAGT
TGATGATGACTGGATGATGATGCTTTTGGTTTGGTTTTCTGTAAAGAACACCAATTGTAC
AGTCGGATCTATGGATACTTGTGCTAGTTCTGCATGCTTTTATTTTCTCTATGGTTAAAA
CTCAAGACTGGTCTCTAATCTGGTTGTCGGTGTGGAAGTATGAATCCCCACATTGTGCAT
TTGTGAGTGGTCCTTGTGTCAAATTTATTCTTTATTTCTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None