barSeed - Barley Seed Development Database

Probe CUST_16467_PI390587928

Source Contig U35_5172

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16467_PI390587928	Hv_44K_v2	GTTCATTGCGGAAACATGTTATCGTGTATGGAGTTAATGGTAATAAAAGATGAGTTGTGT	770	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.238	2.112	1.041	0.814	0.337	0.439
Raw	544.808	780.914	341.193	427.317	62.811	87.682

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370601	3881	2e-24	3820 - 3879	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.7	2128	2e-24	2053 - 2112	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.6	2389	2e-24	2322 - 2381	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.3	3836	2e-24	3769 - 3828	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.1	2731	2e-24	2656 - 2715	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.5	2665	2e-24	2605 - 2664	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.4	2635	2e-24	2545 - 2604	100	60 / 60	plus	ABC13060
JLOC1	JLOC1_34125.1	2661	8e-25	2571 - 2630	100	60 / 60	plus
Harvest21	ABC13060	846	3e-25	771 - 830	100	60 / 60	plus	ABC13060
Harvest35	U35_5172	845	3e-25	771 - 830	100	60 / 60	plus

Contig Sequence (845 bp)

>U35_5172 845 Hv_44K_v2
GAAAAGCTTTTCTGGAACAAGTATGAGAAGGCTAAGTCTGTTTATGACAAGAAGCTGTGG
AATGGTTCTTATTTCAATTATGATGATGCTGGCACTAAAGCTAGCACCTCCATTCATGCT
GATCAGTTGGCTGGACAATGGTATGCCAAAGCCTGTGGCCTATCCTCAATTGTTGACAAG
GACAAGTCACAAAGTGCACTTGAAAAGATATATGCTTTCAACGTAATGAAGTTCAAGGAT
GGTAACAGGGGAGCAATAAATGGGATGTGGCCAGATGGTACATTGGACATGTCCACAATG
CAATCTAGGGAGATATGGCCAGGCGTGACATACGCCCTTGCTGCATCTATGATTCAGGAA
GGCATGGTTGATGAGGGTTTCAAAACAGCTGAAGGGATCTATAATGCTGCCTGGTCTACG
GAAGGGCTTGGGTACGCATTCCAAACTCCCGAATCTTGGAACAATGACGATGAGTACCGG
TCCTTGTGCTACATGCGCCCACTCGCCATATGGTCGATACAGTGGGCACTCTCAAACCCA
AAGCTCCACAAGGCGCCTCAGACAGACATAACACAAGATTCTTTTCCAAAGAACCAGTTC
TCATATGCACGAATAGCGAAGCTCCTGCAGTTGCCTGAAGATGAATCGTCCAAGAGTCTC
CCTCGGGTTATCTATGAGATAGTTCGGAACAGGTTTAGTTCATGATCTATGGGACGCGAC
ATTGCCTGAATGTTAAATGTACTATTGGAGCAACAATGTTTATTTTGATTGTTCATTGCG
GAAACATGTTATCGTGTATGGAGTTAATGGTAATAAAAGATGAGTTGTGTAAAAAAAAAA
AAAAA

Homology of Contig U35_5172 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g13810.1	951	2e-134	protein\|non-lysosomal glucosylceramidase, putative, expressed
Brachypodium v1_2	Bradi4g21277.1	954	7e-147
Arabidopsis v10	AT5G49900.1	957	2e-89	Beta-glucosidase, GBA2 type family protein \| chr5:20297235-20302019 REVERSE LENGTH=957