barSeed - Barley Seed Development Database

Probe CUST_16465_PI390587928

Source Contig U35_5174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16465_PI390587928	Hv_44K_v2	CTGACCTTATGCTCATAACGTTGCTGCATGAACTATGTATAGAAAATAAATTTCACAGCA	1423	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55934.4	3499	7e-23	844 - 903	98	59 / 60	plus	ABC06594 ABC15956
MLOC	MLOC_55934.3	6150	7e-23	2059 - 2118	98	59 / 60	plus	ABC06594 ABC15956
MLOC	MLOC_55934.1	3003	3e-21	326 - 382	98	56 / 57	plus	ABC06594
JLOC1	JLOC1_36121.3	4927	4e-23	4037 - 4096	98	59 / 60	minus
JLOC1	JLOC1_36120.1	7070	4e-23	1902 - 1961	98	59 / 60	plus
Harvest35	U35_5174	1499	3e-25	1424 - 1483	100	60 / 60	plus

Contig Sequence (1499 bp)

>U35_5174 1499 Hv_44K_v2
CGGCGGCGGCGGGCCAGCGTCGTGGCGCGGACGCGGCCGCGGTCGCTCGAGTCCTCCACG
GCCACGCTGCGGGCCAACGGCTCCGTCGCCAGCATCGACTCCAGCGTCTCCGTCTCCGTC
GTCTCCGAGAGCGTCGCCGACTGGGGTCACAACCCTCTGCCGCCCGGGAAGCGCGTCGCC
TTCTGGGGCTGGCGGGGCGCCGCCAACGGCAGGGACCAGCAGCCCCTCTCCGTCTCCGGG
ATCCCCAAGTACCACTACAAGGATCTGCAGAAGGCTACCAACAACTTCACCACGATCCTG
GGGCAAGGATCGTTTGGTCCGGTGTACAAGGCTGTAATGGCTACCGGTGAAGTCGTGGCT
GTAAAGGTTCTCGCGAGCGATTCTACGCAAGGGGAAAGAGAGTTCCAGACAGAGGTAATT
TTGCTTAGTCGGTTGCATCATAGAAATCTTGTTAATTTGGTTGGATATTGCGTGGAAAAA
GGTCAACACATTCTGATGTATGAGTACATGAGCAACGGGAATTTGGCGACCCTTTTGTAC
GGTGATAATAAACGGAGTTTGAGCTGGCAAGAGAGGCTACAAATAGCTCACGACGTCTCT
CACGGGATTGAGTACCTGCATGAAGGGGCTGTCCCGCCTGTTATTCACCGAGACCTAAAG
TCTGCTAATATACTCTTGGACGAATCAATGAGGGCCAAGGTTGCAGACTTTGGTCTATCA
AAGGAGGAAGTATTCGATGGAAGGAAGTCAGGTCTCAAGGGCACCTATGGATATATGGAT
CCTGATTACATGTCCACCAACAAGTTCACAAAGAAGAGCGATGTTTACAGTTTTGGCATA
ATACTTTTTGAACTCATAACAGCCATAAATCCACAACAAGGTTTAATGGAGTACATTGAC
CTAGCAGCAATTGGAGGGGAAGGAAAGGTGGACTGGGATGAGATACTCGACAAGAACCTC
CTTGAGGGGAGCGTTCCGGAAGAGGCAAGGGTCCTTGCCGATGTCGCCTACCGGTGCATC
AACAGGAGCCCAAGGAAGCGGCCATGGATATCAGAGGTCACCCAGGCCATATCAAGGCTA
AGGCAGCGGCAGATGAATTTGCCGAGGAGCGAGACCAGGACTGTGCTAAGGAGGATAGAG
TACCAGCACGTGGAGCTCAGCGATCTCGCCGGCATGAAAGAACTCACGCCGGTAGGAGCC
TGAAGTCCCTCCCTCCTTGCTGCTACTATTTGATGAAACCATCAGTTAGTTTTGGCCTTT
TAAGGTGTCTAACTTGGGGTTGGAATAGATGTAAATAATCTCGAAGGTAGAGTTTGGCAG
GATGATCGTCTCTCCATTGGTAGACTGGCAAATTGGTAATATGAACACTCTAGTAACAAA
TTCTAGAAAGTGTAAATCGATGAAGGGGACATTAAACTGCATGCTGACCTTATGCTCATA
ACGTTGCTGCATGAACTATGTATAGAAAATAAATTTCACAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g17285.2	435	0.0	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi1g43580.1	439	0.0
Arabidopsis v10	AT5G15730.2	436	3e-139	\| Symbols: CRLK2, AtCRLK2 \| Protein kinase superfamily protein \| chr5:5131284-5133046 FORWARD LENGTH=436