barSeed - Barley Seed Development Database

Probe CUST_16464_PI390587928

Source Contig U35_5175

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16464_PI390587928	Hv_44K_v2	TCTTATCGATCGCCATTAAAGATAGATACTGCTTGTTGCCTGTTATACTTTCTTTCTTCC	1701	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.254	2.082	1.203	0.703	0.258	0.283
Raw	1171.243	1639.553	872.583	778.305	104.369	123.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36681.4	2269	2e-24	2141 - 2200	100	60 / 60	plus	ABC11551
MLOC	MLOC_36681.3	3261	2e-24	3104 - 3163	100	60 / 60	plus	ABC11551
JLOC1	JLOC1_23652.2	2762	8e-25	2586 - 2645	100	60 / 60	plus
JLOC1	JLOC1_23652.1	2679	8e-25	2503 - 2562	100	60 / 60	plus
Harvest21	ABC11551	1792	3e-25	1702 - 1761	100	60 / 60	plus	ABC11551
Harvest35	U35_5175	1792	3e-25	1702 - 1761	100	60 / 60	plus

Contig Sequence (1792 bp)

>U35_5175 1792 Hv_44K_v2
GATGGAAGGAAAAGGTGGCAGTCCCTTGAATATGGATCAATTGTTTATGAAAGTCATGGC
CACATGTCCTCAAAGGGGACATGAAACATTATCTCCTGATGCAATCTCACAGATGTTAAA
TGATAAGCTCTCCAAACAAGACACCTCGTCTGGAGGTTGTAGCGATAAATTCAAGGAATT
GTTAACAAAATTTATAGGGAATCGTATCAAAATGCTGAGAAGCACAAGGCGAGCGCTTCA
CCTAGATGAAGATCATGTGGGGACGAAGGACTCCAGCATTGAAGAGTGCATTGCTGCTAA
TATTTCTGGCATATCTGCAAAACAACTGGAGGTTTTTCTTGATACTTGTTTATCTCGTTA
TCACTCAAAAATAATTGAAGCAGGAGCATCAATAGGTGCAATCGGGGCTCAGAGTATTGG
GGAGCCTGGGACCCAAATGACATTGAAAACCTTCCATTTTGCAGGAGTAGCCAGCATGAA
TGTTACTCTTGGAGTTCCCCGCATCAAGGAAATCATCAATGCTGCTAAAAAGATAAGCAC
ACCTATTATCACTGCAGAACTTCTGTCTGGGCAGGACGAGTCATTTGGTGTAAAGGTGAA
ACGTTGTATCGAGAAAGTAGTGCTGGGCGAGGTGGCAGCAGCCATAAAGATTGTCTTGAA
ATCAAGCCAGCCAAATTTGGTTGTGAAACTTGATATGCAACGAATAGAAGCTCAGGGATA
CGTAGGAATCTCTGCTAACTCTGTGCAGCTATCAATTATAAATTATTCAAAACTCAAGTT
AAAATCTGAGCATGTTCGTGTAATTGATGAAGACAAGTTGAGAATATATCCATCTGGAAC
AGATAGATCCAAACTCCAGTTTGAGCTGCACAATCTCAAATCCATGCTTCCAAAAGTGAT
TGTGAAGGGTATTCCAACTGTTGAAAGAGCTGTTGTCAACCCCGTGAAAGGACGTGACAG
AAACATCGAAAGATATAACTTGTTGGTTGAAGGAACAAACCTCTTAGCAGTATTGGGTGC
TCCAGGAGTTGATGCTATGAAAACAAAAAGTAACCACATCATGGAAGTGAACCAAACGCT
TGGAATCGAAGCCGCAAGGAGATCTATCATCGATGAGATTCAGTATACATTTGAGAGCAA
CAACATGATCATTGATCTGAGACATATGATGCTTCTGGCAGATCTGATGACATACAAGGG
GGAAGTCCTGGGCATCACGAGATACGGCATTGCAAAGATGAAGAGCAGCGTGCTGATGCT
GGCCTCTTTCGAGAAAACTTCGGAGCATCTCTTCAACGCTTCATACGCTGGGCGTGAGGA
TCAGATAGATGGAGTCAGTGAGTGCATTATCATGGGCATACCCATGCGACTTGGCACTGG
CATTCTCCAAGTTAGGCAAAGGCTTGAGAGCGTGCCTGAACTTAAGTACCAGACCGATCC
AATTATGTCGTCATAATACGGAGGCATACCACAGTGAAAATCCATCCATCCGAAGCTGGC
AGTTGGAGCAACATAGATAGGGCTGTAGGTAGTTTTGAGGCGTCATGCATGCCAGATGGC
ATGGGGAAGGCAAGGGCATTTTTGGACAGGACCCAGAGCCATCGGGTGTTTTTTTTTTCT
AGTGGGGTCGCTTTAGCTTAGAGAAGGAAACGAAATCATTTTGAGAGCATTTATACCAGT
GTTAGTGTTGATTACAGTATATCTTATCGATCGCCATTAAAGATAGATACTGCTTGTTGC
CTGTTATACTTTCTTTCTTCCAAAAAAAAATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41490.1	1384	0.0	protein\|DNA-directed RNA polymerase III subunit RPC1, putative, expressed
Brachypodium v1_2	Bradi3g43050.1	1393	0.0
Arabidopsis v10	AT5G60040.2	1391	1e-120	\| Symbols: NRPC1 \| nuclear RNA polymerase C1 \| chr5:24173590-24183269 FORWARD LENGTH=1391