barSeed - Barley Seed Development Database

Probe CUST_16454_PI390587928

Source Contig U35_5185

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16454_PI390587928	Hv_44K_v2	TCCTTGTAGCGCACAGCAACTTGATGTTTAAATTGCTTACGCAGTTTCAGCGTCAAAAAA	1187	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.562	1.527	1.191	0.915	0.432	0.464
Raw	219.950	333.223	231.118	276.440	45.158	53.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_37407.1	1591	2e-21	89 - 142	100	54 / 54	minus
JLOC1	JLOC1_37406.1	1990	2e-21	1849 - 1902	100	54 / 54	plus
Harvest35	U35_5185	1258	3e-25	1188 - 1247	100	60 / 60	plus

Contig Sequence (1258 bp)

>U35_5185 1258 Hv_44K_v2
GGAAACACACCATCAGGTTTCCAGTGCATAGCAAGGACACTGATAGGAATACAGCTGACA
GTTCGACATCAACAATATCATACAAGCGTAAGTTGGATGATGTGGAATCACTCGCTCATA
AGAATCTTCAAGAAAGAGCAGCTACTGCCTTGCAGAAATCAGAAGACGGAGAAACAAAGT
CAACAGATAATGCCTTGCAGAAATCAGAAGACGGAGAAACAAAATCAACAGATAACGCCT
TGCAGAAATCAGAAGACGGAGAAACTAAGTCAACAGATAATGCCTTGCGGAAATCAGAAG
ACGGAGAAATAAAGTCAACAGATAATGCCTTGCAGATATTAGAGGACGGAGAAACAAAGT
CAATAGATAATGCCTTGCAGATATTAGAGGACGGAGAAACAAAGTCAACAGATAAAAAGC
ATGAAGAAACAGCTAAAAAGGAGCCTGCTATTACATCTTACCAAGCTCTGTCGCAGAAAC
AACACCCTCCAAAGAGACTTGTTTATACTCGCCGTGGCTCCTCCAAAAAGAAGCAACGGA
GTCAGGATGTTGTAGTACAAGGGCCTGTTGGTGGATAGCAGCAGCCTATCGAAGTGGCTC
CTTTCTCCATCGCCAGGAAACATGGTTTCATGCCCGGCGTCCGAAAAGCAGATTGCAGCA
AGCGGGGCTGGCCAGTGTTACCATCTCATCACACAGCCAATAGGGGCACGGACGAGCTGA
GGTTATAAAATGGTGCACACCGAGCCCTTGCAGTGTGATTTGAGCTTCCAGCCAGAAGGT
TTGACCCCTTGAGCTGATGCCACTCAGATGACGTGGCGGCATGGGTGAATTCATCCACTA
ATTAAGTTATCAGAGGGCAGATTTTGTGAAATATGCTATGTACATTGTCATCTCTGCAAT
CATTAGTTTAGTCTTGTAACAGAGAACAAGTAGCTACATCTGGTGGATGATGAAAGAAGA
GGGAGGGTAGTAGCGGGTTGTGACTGACTGACATCTGTAGCTGACAAATTGACTTGTGTA
GTTAACGTAGGCCATCCATCTGCAGATGAATGATCTCTGTACAACACCAGTAGCATATGT
AGGCCCGAATGTACACAGAAATTTGACTGCTCGGTTGACGAGTATGTGTGTGGGTGTGCT
TACATTAGTTTGTGACCTTTGAGACAAAACGTTGCCAGTTTCATGAATCCTTGTAGCGCA
CAGCAACTTGATGTTTAAATTGCTTACGCAGTTTCAGCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None