barSeed - Barley Seed Development Database

Probe CUST_16447_PI390587928

Source Contig U35_5192

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16447_PI390587928	Hv_44K_v2	TCCCTTGTATTGTTCTCTGATTGAGACCTCTGCTGTTATGTTCAATACATTCGATCTTTC	531	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.360	1.550	1.729	0.876	0.238	0.263
Raw	2135.173	3709.627	3695.870	2981.774	282.552	337.048

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22044.1	1400	2e-24	98 - 157	100	60 / 60	minus	ABC24888
JLOC1	JLOC1_15280.1	1260	8e-25	1148 - 1207	100	60 / 60	plus
Harvest21	ABC24888	500	3e-25	422 - 481	100	60 / 60	plus	ABC24888
Harvest35	U35_5192	654	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_5192 654 Hv_44K_v2
GGCAGAAGAAACTGAGCGATTTGGTGACTCTGGTTTCTCTCAGTACAGCAGCAGCTTGTC
ATCTGGCCAGGGCAGGGGGAAGAAGACCAAGGAGGAAGAGAACGTCGGCCAGGGCAGGAG
GAAGAAGACGACCAAGGAGGAAGAGAACGTCGGCCTCGAGCCAGCCTCGAAGAGCGAGTC
CATGTCATACCCCACGTCGTCCTATGGCAGCTTCTTGGCCTTTGAGAAGATCGCTGCCAA
GAAAAAGAACAAGGATGATGATGAGGTGATGACCCCGGTCCGACGCTCCAGCAGGCTGCG
GAGTGTCAAATCACCTGACGCCGGGTCTAGTTAGTGCTCTAACTACCTACCATTCAGGGC
ACCTGACTCGTAGCTGCTTGCCCAGTTCCACGCACCTTGTTAGACAGACAGACATGTTTG
ATGATAAAATACAGCTTTCTGCTGTTATGTTCTACATATTTGACTAGTGGCTAGGATTTG
TTTTTGTGGTTTGAGATTGCTTTTGAAACTGCATAAGTGATTGTGGACAGTTCCCTTGTA
TTGTTCTCTGATTGAGACCTCTGCTGTTATGTTCAATACATTCGATCTTTCTTAAAAAAA
AAAAAAAAAATAATGCTTTCAGTTAGAACAGTGAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None