barSeed - Barley Seed Development Database

Probe CUST_16443_PI390587928

Source Contig U35_5196

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16443_PI390587928	Hv_44K_v2	ATCCGGACTTTGACCAGACTTCAATATATAGAATCAGCCTTCCGTCCATGCTCCAAAAAA	1470	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.230	1.389	1.089	0.969	0.432	0.450
Raw	2004.237	3475.413	2436.167	3357.473	529.245	604.161

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5770.1	688	3e-21	117 - 170	100	54 / 54	minus	ABC11405
MLOC	MLOC_5772.2	1665	3e-21	1091 - 1144	100	54 / 54	minus	ABC03461 ABC11405 ABC37907 ABC37949
JLOC1	JLOC1_3734.1	742	2e-21	117 - 170	100	54 / 54	minus
Harvest21	ABC11405	696	3e-25	12 - 71	100	60 / 60	minus	ABC11405
Harvest35	U35_5196	1541	3e-25	1471 - 1530	100	60 / 60	plus

Contig Sequence (1541 bp)

>U35_5196 1541 Hv_44K_v2
GATCAAGGTCAACAACCCCATCGTCGAGATGGACGGTGACGAGATGACGCGCGTAATATG
GAAGATGATAAAGGATAAGCTTATCTTCCCGTACCTGGACCTGGATGTCAAGTACTTCGA
CCTTGGGGTGCTAAACCGGGATGCCACTGATGACAAGGTCACTGTCGAGAGCGCTGAGGC
TACTTTGAAGTACAATGTTGCTGTTAAGTGTGCTACAATTACTCCTGATGAAACAAGAGT
CAAAGAGTTCAAGCTCAAGTCAATGTGGAGGAGCCCAAATGGCACCATCAGGAACATTCT
AAATGGAACTGTTTTCCGGGAGCCCATCTTATGTAAAAATATTCCACGCATACTTACTGG
TTGGAAGAAGCCCATTTGCATAGGAAGACATGCATTTGGAGACCAGTATCGAGCTACCGA
TATGATTATTAATGGACCTGGGAAGCTTAAGATGGTTTATGTGCCTGATGGAGCTGAGCC
GGTGGAGCTAAATGTTTATGATTTTAAAGGGCCTGGAGTCGCATTAGCAATGTATAATGT
GGATGAGTCTATTAGGGCATTTGCTGAGTCATCAATGGCAATGGCACTATCCAAGAAATG
GCCTCTTTATCTCAGCACCAAGAACACAATACTAAAAAAATACGACGGCAGATTCAAGGA
CATTTTTCAGGAGGTATATGAAGAGAATTGGAAGGAGAAGTTTGAGGAAAATTCAATATG
GTATGAACATCGGTTGATTGATGACATGGTGGCATATGCTGTGAAAAGCGAGGGTGGATA
TGTCTGGGCATGCAAAAACTACGATGGAGATGTTCAAAGTGACTTCCTTGCCCAAGGTTT
TGGTTCCCTGGGTTTGATGTCATCCGTTCTGTTATCTTCTGATGGGAAGACATTAGAGGC
AGAGGCTGCTCATGGGACTGTCACTAGACATTTCAGGTTACATGAGAAGGGACAGGAGAC
GAGTACGAATAGCATAGCTTCTATATTTGCTTGGACTCGTGGGCTAGAACATAGAGCAAA
GCTGGATAAAAATGATAGGTTGCTGGATTTCACAGAGAAGCTTGAAACTGCATGTGTTGA
AACAGTGGAATCTGGGAAAATGACAAAGGATCTTGCACTTCTTAGCCATGGCGCCAAGGT
AACAAGGGAGCATTACCTGAGCACCGAGGAATTCATTGATGCTGTCGCTCAGCAGCTGCG
GGAAAAGATCCAGATACCATCATCGTTGTAATTTTCACCCATGTGCATATGTTATTTCTA
GCTGGAAGAAGCCTATGGGAATGTGGTTGACCTGGTGCATTGGGCACGCATTTTGATTGA
TACGATGAGATGGAGTATCTGATCCAGTTGCGTCTGTGTCTGGAAGCAGTTTTTGTAAGG
CCTAACATTCGATCGTGTTAATAATCTGTCTGCTATATGTGATTCTCCCTTCGGCGTCTG
TTTGGGTAAATAATTGTCCATAAGCAGTGAATCCGGACTTTGACCAGACTTCAATATATA
GAATCAGCCTTCCGTCCATGCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5196 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g42920.1	479	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g15210.1	482
Arabidopsis v10	AT5G14590.1	485	Isocitrate/isopropylmalate dehydrogenase family protein \| chr5:4703533-4706627 REVERSE LENGTH=485